Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0725 ATGAATGACTTGTTCTCTGGCTCCTTCTCCCGCAACAACGACCAAGTCTTGCCTGACCACCACCACCATGTGATCGAGATGGCGGCCGCGTCATCACCAACAGCCGAGGGCAGCGCGAACCTTGAAAAGTTCTTTCAAGAAGTTGAGCAGGTGAAAGAGGACCTGAAGGAGCTGGAGCGTCTCCATGAGAATCTACGTGGGAACCACGAGAAGAGCAAGACCCTTCACAGCGCGAAGGCTGTGAAGGAGCTTCGCTCACGCATGGATGCTGATGTGGCACTCGCTTTAAAGAAAGCGAAGCTCGTCAAGGTCCGGCTCGAGACGCTGGACCGGTCCAATCAGGTGAGCCGAAACTTGCCTGGTTTGGAACCTGGTTCGTCCTCGGACCGGACCAGAACGTCTGTGGTGAGCGGACTGAGGAAGAAGCTGAAGGACTCTATGGACAGCTTCAACAGCCTCAGACAACAGATATCATCGGAGTACAGGGAAACCGTGCAGCGTAGATATTATACGGTCACCGGAGAGAATCCCGATGACAAAACCATTGACCTCCTCATTTCTACTGGTGAGAGTGAAACATTCTTGCAGAAAGCGATCGAGCAGCAAGGTAGAGCCAGCGTGATGGACACAATCCAAGAGATTCAAGAGAGGCACGACACAGTCAAGGAAATAGAGAGAAACCTAAACGAGCTTCACCAAGTGTTCTTGGACATGGCCGTGTTGGTGCAATCCCAGGGAGAACAATTGGACGACATCGAAAGCCACGTGGCACGCGCCAATTCATACGTGCGGGGTGGGGTCCAGCAGCTGCACGTGGCAAGGAAGCACCAAAAGAACACCCGAAAGTGGACATGCATAGCCATCATATTGCTCATTATTATCATCTTGATCATAGTCCTCCCTATAGTTCTAAGAAAATGA 921 0.5179 MNDLFSGSFSRNNDQVLPDHHHHVIEMAAASSPTAEGSANLEKFFQEVEQVKEDLKELERLHENLRGNHEKSKTLHSAKAVKELRSRMDADVALALKKAKLVKVRLETLDRSNQVSRNLPGLEPGSSSDRTRTSVVSGLRKKLKDSMDSFNSLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIEQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLIIIILIIVLPIVLRK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0725 306 Gene3D - 200 304 - -
Gso10g0725 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 12 301 - -
Gso10g0725 306 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Gso10g0725 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Gso10g0725 306 CDD SynN 41 198 IPR006011 GO:0016020
Gso10g0725 306 SMART tSNARE_6 206 273 IPR000727 -
Gso10g0725 306 MobiDBLite consensus disorder prediction 115 134 - -
Gso10g0725 306 SMART SynN_4 36 162 IPR006011 GO:0016020
Gso10g0725 306 Pfam SNARE domain 247 299 IPR000727 -
Gso10g0725 306 Coils Coil 41 75 - -
Gso10g0725 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso10g0725 306 Gene3D - 38 171 - -
Gso10g0725 306 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Gso10g0725 306 CDD SNARE_syntaxin1-like 210 270 - -
Gso10g0725 306 PANTHER SYNTAXIN 12 301 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0725 Gso-Chr10 10043710 10046280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0725 30 285 SNARE and Associated Proteins AT3G11820 71.875 7.59e-137 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0725 K08486 - gmx:100793347 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1657 2 39067090 39069828 Gso10g0725 10 10043710 10046280 GST
Gso19g1681 19 45738865 45741250 Gso10g0725 10 10043710 10046280 PCT
Gso3g1712 3 42989206 42991640 Gso10g0725 10 10043710 10046280 PCT
Gso10g0725 10 10043710 10046280 Gso19g1681 19 45738865 45741250 PCT
Gso10g0725 10 10043710 10046280 Gso3g1712 3 42989206 42991640 PCT