Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0717 ATGGACGAGATCGACGTGCCTCCTTTCTTCGTATGCCCTATCTCATTAGAGCTCATGAAGGACCCCGTTACGGTCTCCACCGGCATCACCTACGACCGCCACAGCATCGAGAAGTGGCTCTTCGCCGCCGTGCCGAAGAACAACACGTGTCCCGTCACGAAGCAGCCCCTCCTCCCGGACCTCACTCCCAACCACACGCTCCGCAGGCTCATCCAAGCCTGGTGCACCGTCAACGCTTCTCACGGCGTCCAGAGAATCCCCACGCCAAAACCTCCCGTCGACAAAACCCTCATCGAGAAGCTCCTCCGCGACGCCTCGGCTTCCGATTCCCCGAGCCTCCAGCTCCGGTCCCTCCGAACCCTCAAGTCCATCGCCTCGGAATCCCAATCAAACAAACGCTGCATCGAATCCGCCAAAGACGCAGTTAGTTTCTTAGCATCATTTATAACCACCACTGTCACCGTCACCACTACCACCGTACTCCTCGATGACGTCGAGTTGGAAATAAAAACAAGTATAGCCCACGAAGCATTGAGCCTTTTACACAGCATTCAGCTGTCAGAATCCGGTTTAAAGGCTCTGATGAACCATCCAGAGTTTATAAACTCTCTAACCAAAATCATGCAGAGTGGAATCTACGAGTCACGCGCCTACGCGGTTTTCTTGCTGAATTCCTTATCCGAAGTGGCGGATCCGGCGCTGTTGGTTAACCTAAAAATTGATTTGTTCACTGAACTGGTTCAAGTTCTTAAGGATCAGGTTTCGGAGAAGGCCTCGAAGGCGACGCTGAGAGCATTGATCCAGGTGTGTCCGTGGGGGAGGAATAGGGTGAAGGCGGTGGAGGCCGGAGCAGTGCCGGTTCTGGTGGAGCTTCTTCTCGAATGCAAGGAGAGAAAACCAATTGAAATGATGCTTGTTTTGTTGGAGATTTTATGTCAGAGTGCTGATGGAAGGGCTGGTTTGTTGGCCCACGCGGCGGGGGTGGCGATAGTGGCGAAGAAGATTCTGAGGGTGTCCACGATGGCCAACGATAGGGCGGCGAAGATTCTGCTTTCGGTGTGCAGATTCTCTGCCACCCACGGCGTGGTGCAGGAGATGCTGCAGCTTGGGGTGGTGGCGAAGATGTGTTTGGTGCTGCAAGTGGATAGTGGGAACAAAGCGAAAGAGAAGGCTAGGGAGATTCTGAAATTGCATGCTAGGGCTTGGAGGAACTCGCCTTGCATACCTCACAATTTGCTTGCTTCGTTTCCAATGAGTTCCTGA 1263 0.5352 MDEIDVPPFFVCPISLELMKDPVTVSTGITYDRHSIEKWLFAAVPKNNTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGVQRIPTPKPPVDKTLIEKLLRDASASDSPSLQLRSLRTLKSIASESQSNKRCIESAKDAVSFLASFITTTVTVTTTTVLLDDVELEIKTSIAHEALSLLHSIQLSESGLKALMNHPEFINSLTKIMQSGIYESRAYAVFLLNSLSEVADPALLVNLKIDLFTELVQVLKDQVSEKASKATLRALIQVCPWGRNRVKAVEAGAVPVLVELLLECKERKPIEMMLVLLEILCQSADGRAGLLAHAAGVAIVAKKILRVSTMANDRAAKILLSVCRFSATHGVVQEMLQLGVVAKMCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPHNLLASFPMSS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0717 420 CDD RING-Ubox_PUB 10 55 IPR045210 -
Gso10g0717 420 SUPERFAMILY ARM repeat 90 325 IPR016024 -
Gso10g0717 420 Gene3D - 87 405 IPR011989 -
Gso10g0717 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Gso10g0717 420 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gso10g0717 420 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gso10g0717 420 SUPERFAMILY RING/U-box 3 81 - -
Gso10g0717 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 418 - -
Gso10g0717 420 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Gso10g0717 420 PANTHER WDSAM1 PROTEIN 1 418 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0717 Gso-Chr10 9917985 9919753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0717 2 417 U-box Gene Family AT2G35930 54.374 1.92e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0717 - - gmx:100785598 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1662 2 39213897 39215616 Gso10g0717 10 9917985 9919753 GST
Gso10g0717 10 9917985 9919753 Gso19g1678 19 45703695 45705325 PCT
Gso10g0717 10 9917985 9919753 Gso3g1707 3 42925444 42927116 PCT