Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0676 ATGTCCAGCGCCGCCGGAGCTCCCGATCGCCGCGCCTCTCCGCCGCGGGTGGCTGCCGGCGCCCCCACCCGCCCGCCGCTCAAGCGCCACCTCGCCTTCATCACGAAACCGCCCTTCGCCCCGCCTGACGAGTACCACAGCTTCTCCAGTATTGGCTCCCGCCGCGCCGCCGATGAAGCCGTCGTCGTTAGATCTCCGTACATCATGAAGCGGAAGAGTGGAATGAATGACAGTGAAGGGGAGTCACTAGCACAAAAGTGGAGTAACAGTCCTGGATACACTAATGTTAGCAATGTAACAAATAATAGTCCCTTTAAAACTCCTGTGTCTGCAAAAGGGGGAAGGACACAGAAGGCAAAGGCTTCCAAAGGCAGATCATGTCCTCCGACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTAGCAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAACATGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGAATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTGCTACATCTGGTGATGTGGATGGTGATATCTCTTTGCTTAAGGCAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGAATAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAATTTGAGTGAAAATGAAAACAACCAGAAGTGCCTTTTTGTGACTGAAGAAGATATTAAGGACCTACCTTGCTTCCAGAATGAAACTCTAATAGCAATTAAAGCTCCGCATGGAACCACCCTGGAAGTCCCCGATCCTGAGGAAGCTGTAGACTATCCACAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTATCAGTCAATTTGAAGAGAAATTTGAAGAAGTTAATGGTGCTGAGCTCCCAATGATCCCACTTGCTTCCAGTTCTGGTTCCAATGAGCAACTAATGACAGAAATTGTTACTGCTGAATGCAGCGGAAAAGAACTTGAACCTCAAACTCAGCTCTCTTCTCATGCATTCTCTGATGCTTCACAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGATGCAGACTATTGGCTTCTATCAGATGCTGACATTAGTATAACAGATATGTGGAGAACAGATTCTAGTGTCGATTGGAATGGTGTAGACATGCTTCATCCTGACTTTGGAGTCATTTCAAGGCCTCAAACTCCATCATCTGGGTTTGCTGAAGTGCCATCAACAGCAGCAAACTCTATTCAGAAGTGA 1401 0.459 MSSAAGAPDRRASPPRVAAGAPTRPPLKRHLAFITKPPFAPPDEYHSFSSIGSRRAADEAVVVRSPYIMKRKSGMNDSEGESLAQKWSNSPGYTNVSNVTNNSPFKTPVSAKGGRTQKAKASKGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESATSGDVDGDISLLKAEVEKLSLEEQGIDDQIREMQERLRNLSENENNQKCLFVTEEDIKDLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEVNGAELPMIPLASSSGSNEQLMTEIVTAECSGKELEPQTQLSSHAFSDASQEFAGGMMKIVPSDVDNDADYWLLSDADISITDMWRTDSSVDWNGVDMLHPDFGVISRPQTPSSGFAEVPSTAANSIQK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0676 466 MobiDBLite consensus disorder prediction 78 110 - -
Gso10g0676 466 Pfam E2F transcription factor CC-MB domain 229 329 IPR032198 GO:0046983
Gso10g0676 466 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Gso10g0676 466 SUPERFAMILY E2F-DP heterodimerization region 226 330 IPR037241 -
Gso10g0676 466 CDD E2F_DD 226 330 IPR032198 GO:0046983
Gso10g0676 466 MobiDBLite consensus disorder prediction 447 466 - -
Gso10g0676 466 PANTHER TRANSCRIPTION FACTOR E2FB 25 454 - -
Gso10g0676 466 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Gso10g0676 466 MobiDBLite consensus disorder prediction 72 143 - -
Gso10g0676 466 Coils Coil 233 267 - -
Gso10g0676 466 PANTHER TRANSCRIPTION FACTOR E2F 25 454 IPR015633 GO:0000978|GO:0006357
Gso10g0676 466 MobiDBLite consensus disorder prediction 127 143 - -
Gso10g0676 466 Gene3D - 220 330 - -
Gso10g0676 466 Gene3D - 142 215 IPR036388 -
Gso10g0676 466 MobiDBLite consensus disorder prediction 1 27 - -
Gso10g0676 466 SUPERFAMILY "Winged helix" DNA-binding domain 148 211 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0676 Gso-Chr10 8763722 8768782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0676 22 463 E2F-DP Transcription Factor Family AT2G36010 56.421 1.74e-161 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso10g0676 E2F_CC-MB 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0676 K06620 - gmx:100809283 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1689 2 40178708 40183896 Gso10g0676 10 8763722 8768782 GST