Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0655 ATGTCCATAAACCACTACTCCATGGACCTTCCCGAACCGACACTCTGGTGGCCACACCCACACCACCAACAACAACAACTAACCTTAATGGATCCTGACCCTCTCCGTCTCAACCTCAATAGCGACGATGGCAATGGCAATGACAACGACAACGACGAAAATCAAACAACCACAACAGGAGGAGAACAAGAAATATTAGACGATAAAGAACCGATGTTCGAGAAGCCCTTAACCCCGAGCGACGTGGGGAAGCTGAACCGTCTCGTAATCCCGAAGCAGCACGCGGAGAAGTACTTCCCACTGAGTGGTGACTCGGGCGGGAGCGAGTGCAAGGGGCTGTTACTGAGTTTCGAGGACGAGTCGGGGAAGTGTTGGCGCTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTTGACGCGGGCGACGTCGTTTTGTTCGAGCGTCACCGCGTCGACGCGCAGCGCCTCTTCATCGGGTGGAGGCGCAGGCGGCAGAGCGATGCCGCCTTGCCGCCTGCGCACGTTAGCAGTAGGAAGAGTGGTGGTGGTGATGGGAATAGTAATAAGAATGAGGGGTGGACCAGAGGGTTCTATTCTGCGCATCATCCTTATCCTACGCATCATCTTCATCATCATCAGCCCTCGCCATACCAACAACAACATGACTGTCTTCATGCAGGTAGAGGGTCCCAAGGTCAGAACCAAAGGATGAGACCAGTGGGAAACAACAGTTCTAGCTCTAGTTCGAGTTCAAGGGTACTTAGGCTGTTCGGGGTCGACATGGAATGCCAACCCGAACATGATGATTCTGGTCCCTCCACACCCCAATGCTCCTACAATAGTAACAACATGTTGCCATCAACACAGGGCACAGATCATTCCCATCACAATTTCTACCAACAGCAACCTTCTAATTCCAATCCTTCCCCTCATCACATGATGGTACATCACCAACCATACTACTACTAG 1014 0.5276 MSINHYSMDLPEPTLWWPHPHHQQQQLTLMDPDPLRLNLNSDDGNGNDNDNDENQTTTTGGEQEILDDKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGDSGGSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDAQRLFIGWRRRRQSDAALPPAHVSSRKSGGGDGNSNKNEGWTRGFYSAHHPYPTHHLHHHQPSPYQQQHDCLHAGRGSQGQNQRMRPVGNNSSSSSSSSRVLRLFGVDMECQPEHDDSGPSTPQCSYNSNNMLPSTQGTDHSHHNFYQQQPSNSNPSPHHMMVHHQPYYY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0655 337 MobiDBLite consensus disorder prediction 227 269 - -
Gso10g0655 337 SMART B3_2 73 179 IPR003340 GO:0003677
Gso10g0655 337 CDD B3_DNA 71 169 IPR003340 GO:0003677
Gso10g0655 337 SUPERFAMILY DNA-binding pseudobarrel domain 68 180 IPR015300 -
Gso10g0655 337 Pfam B3 DNA binding domain 73 178 IPR003340 GO:0003677
Gso10g0655 337 MobiDBLite consensus disorder prediction 195 209 - -
Gso10g0655 337 ProSiteProfiles B3 DNA-binding domain profile. 73 179 IPR003340 GO:0003677
Gso10g0655 337 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 305 IPR044800 GO:0003700
Gso10g0655 337 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 29 305 - -
Gso10g0655 337 MobiDBLite consensus disorder prediction 33 78 - -
Gso10g0655 337 MobiDBLite consensus disorder prediction 183 327 - -
Gso10g0655 337 MobiDBLite consensus disorder prediction 40 62 - -
Gso10g0655 337 MobiDBLite consensus disorder prediction 284 327 - -
Gso10g0655 337 Gene3D - 63 188 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0655 Gso-Chr10 7987284 7990004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0655 67 293 RAV Transcription Factor Family AT5G06250 50.427 2.13e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso10g0655 B3 6.5e-30 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0655 - - gmx:100795470 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1704 2 40507308 40510147 Gso10g0655 10 7987284 7990004 GST
Gso19g1644 19 45359027 45360930 Gso10g0655 10 7987284 7990004 PCT
Gso3g1675 3 42623638 42625628 Gso10g0655 10 7987284 7990004 PCT