Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0638 ATGTCACTATCATCCATTTTTCTAAACCCACCCCCACCCTCACCCTCTTTCCTCCACCTCCACTCCCCCAACCGCCACAACCACCACCACCCGCCAAAACCCCTCCAAATCCGCGCCAAAACCAACCCCACCCTCCAATTCCTCAAACCCTACCTCCTCTCCCAACACAAGCCCATCCTCTGCGGCTGGCTCTGCAGCGCCGTCTCCGTCTACTCCCTCTCCGCTCTCCTCTCCAAGCTCCCCAAACTCCCCATCCTTAGCGCCACCGCCGCCGACGCCGCCCCCATCGCCGCGCTCCTCCTCGTCGCGCGCCTCGCCGCCGGCTACGCGCAGCGCGCGCTCCTCTGGGAGGCCGCGCTCGGCGCCGTCTACGACCTCCGCCTTCACGTCTTCGACCGCGTCCTCCACCGCGAGCTCGCGTACTTCGAGGGCGTCTCCGCCGGTGACTTAGCGTACCGAATCACCGCCGAAGCCTCCGACCTCGCCGTTACCTTGTACACTCTTCTCAACACCATAGTACCTAGTACTCTGCAGTTGTCGGCAATGATGATGCAGATGTTAGTCATAAGTCCTACACTTTCTTTGATTTCAGCCATGATTGTTCCTTGCATGGTGCTAGTTGTTACCTTTCTTGGTCAAGAACTTCGCAAGATATCCAAAGAGGCACATGTTAGTATTGCTGCTCTCTCGGCCTATCTAAATGAGGTGCTTCCTGCAATTCTCTTTGTGAAAGCAAACAATGCACAGTCATGTGAGAATACCAGGTTTAAGAGATTGGCTCTGATGGACTATAATGCAAGGCTGAAGAAAAAAAAGATGAAAGCATTGATTCCTCAGGTTATACAAGCTATTTATTTTGGAGTCCTTTCCATACTTTGCGCTGGTTCGCTGATGATTTCAAGAGGTTCATTGGATCGCTATAGCTTGGTTTCATTCGTGACTTCATTGCTTTTCTTGATTCAGCCAATCCAGGATGTAGGGAAAGCTTATAATGAATGGAGGCAGGGAGAACCAGCTGCTGAACGCTTGCTTGCCATGACCAGGTTCAAAAATAAGGTGGTTGAGAAACCAGATGCTGCTGATTTGGACCGTGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTGGGTATAACGATGACATGGCACTTGTTTTAAATGCATTAAATCTTCACATTAAATCTGGAGAGATAGTTGCTATTGTGGGTCCTTCTGGTGGAGGGAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTGGTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTTTGAGAAGACATGTTAGCGTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGACAGGGTGAAGCATGCAGCTCAAACTGCTCATGCAGACGAGTTTATTAAAAAACTTCCAGAAGGATACAAAACCAATATTGGACCAAGGGGATCAACTTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCGTCCTTGGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACAGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTATTCCTTTTAGACAACGGGAAGCTAAAAGAGCTGCCTCAATCAACTTTGTTGGATGGTCATCACAAGGATTCATTGCTATCATCTGGGCTTGTTATTTGA 1827 0.4756 MSLSSIFLNPPPPSPSFLHLHSPNRHNHHHPPKPLQIRAKTNPTLQFLKPYLLSQHKPILCGWLCSAVSVYSLSALLSKLPKLPILSATAADAAPIAALLLVARLAAGYAQRALLWEAALGAVYDLRLHVFDRVLHRELAYFEGVSAGDLAYRITAEASDLAVTLYTLLNTIVPSTLQLSAMMMQMLVISPTLSLISAMIVPCMVLVVTFLGQELRKISKEAHVSIAALSAYLNEVLPAILFVKANNAQSCENTRFKRLALMDYNARLKKKKMKALIPQVIQAIYFGVLSILCAGSLMISRGSLDRYSLVSFVTSLLFLIQPIQDVGKAYNEWRQGEPAAERLLAMTRFKNKVVEKPDAADLDRVTGDLKFCDVSFGYNDDMALVLNALNLHIKSGEIVAIVGPSGGGKTTLVKLLLRLYDPISGCILIDNHNIQNIRLASLRRHVSVVSQDITLFSGTVAENIGYRDLTTKIDMDRVKHAAQTAHADEFIKKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSSLDSKSELLVRQAVERLMQNRTVLVISHRLETVMMAKRVFLLDNGKLKELPQSTLLDGHHKDSLLSSGLVI* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0638 608 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Gso10g0638 608 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 38 597 IPR039421 -
Gso10g0638 608 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 96 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso10g0638 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 587 IPR027417 -
Gso10g0638 608 CDD ABC_6TM_exporters 108 343 - -
Gso10g0638 608 SUPERFAMILY ABC transporter transmembrane region 48 347 IPR036640 GO:0005524|GO:0016021
Gso10g0638 608 SMART AAA_5 395 583 IPR003593 -
Gso10g0638 608 Pfam ABC transporter transmembrane region 97 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso10g0638 608 Gene3D ABC transporter type 1, transmembrane domain 46 348 IPR036640 GO:0005524|GO:0016021
Gso10g0638 608 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 606 IPR003439 GO:0005524
Gso10g0638 608 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 38 597 - -
Gso10g0638 608 Pfam ABC transporter 386 537 IPR003439 GO:0005524
Gso10g0638 608 Gene3D - 360 605 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0638 Gso-Chr10 7700536 7706341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0638 361 605 Calmodulin-binding Proteins AT2G36910 44.578 9.34e-54 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0638 K02021 - gmx:100788075 1081.24