Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0630 ATGAAACGGGCGCCAGAAGGAGAGGACGTTGGACTTGACGGCGCAGCCGGGAGGACCGTAGTCGAAGGGGCCGGCGACGCTCCAGGAAGTTCACCACGGACTGTCGGAGCACACGATGAAGGGCGCGGACGGCGATTAGGTCTATGTAATTTTATGGCGAGGATTCCTGACAAGATTAGGTCTATTAATGGATCAAAAGAGACGCTTAAGCTTGCTGTTAGAATCACCGATCTTTGGTTCGTTGGGACTCCCAACAAGTCTGAGCAAGCGGAAATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGTTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTCAAGAATGATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTGATTTGCATGAACTGCCTTTTAAGGAATTTAGATTTGTTGAATTTCCAAATGTCGTTGCTGGCAATTTTGTGTCTGGCCTGTTAGTTGATATTATTGGGGTCGTTGATCAGGTGGTCTTTCGGCATGTTTCATCAAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCATACTTTGGGAGAATTACTGCATTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGGGCCGATGGTTATTATATTGACACATGTCAGAATAAAAGATGCGCAGGCTTTAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTTATTAATGATCCTATATTGGAAATTCATGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGACTCCAGTTTTACTACCTGGCGATCAAGCAAGTTCACAAGTTTCAGGGGGAAGCCAGCTATCATCAAAGGATTTGTTTCTTTCAAAAGCTGAAGTCAAAACTATTTTTGAGATCAATGGCATTTTTGAGGTGGACCTGAAAACTAACATCCAAACAGGACCATTCACATGCAGATGTGGCAAGGATAATGATCAACCTGTTCTGAGGTATAGAGTTGAAGTCATGGTTACCCAAAACAATGAGAGTAATAAGTTTTTGCTCTGGGACCGTGAATGTGCTGAATTGATTGGTGAAACAGCTGATGATGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCTCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAAATTCAAAAATGCAGTTGTTCTTAGATACTCAAATGACCTAGATTTGATCAATGTTGTTCTCAAGATGCTGCCTGATAGTGAGGCATGTTCCAAAATAGATCCTTCCAATGTTGATTGCAATAATACTATGCATGCTAAATGTCAGTCTCTGTCTGTCACAGCTGACCATGATCCGGTTGCCGGATTCCCTTTAACACCCAAAAAGCGGGTGTCATCTGATGAAGTTGATGATGAGTTAGGGAGCTCGCCCAGCCCAACTATCGTCTAA 1563 0.4133 MKRAPEGEDVGLDGAAGRTVVEGAGDAPGSSPRTVGAHDEGRGRRLGLCNFMARIPDKIRSINGSKETLKLAVRITDLWFVGTPNKSEQAEMVFVDSEGDQIHVICKSDHLKSWKADLKENCTYVMHNFKVVKNDGQFRVCEHEYKLFFIGVTVVREADLHELPFKEFRFVEFPNVVAGNFVSGLLVDIIGVVDQVVFRHVSSKNTRVVFRMKDLSGEILSCILWENYCIQFLSYLNERGDDGPMVIILTHVRIKDAQALVSNSFKASKLFINDPILEIHEFKERLLDLGVEVTPVLLPGDQASSQVSGGSQLSSKDLFLSKAEVKTIFEINGIFEVDLKTNIQTGPFTCRCGKDNDQPVLRYRVEVMVTQNNESNKFLLWDRECAELIGETADDVNRVKIEDGDLDLNASPQALDKLLGHVLAFKVRIQSKFKNAVVLRYSNDLDLINVVLKMLPDSEACSKIDPSNVDCNNTMHAKCQSLSVTADHDPVAGFPLTPKKRVSSDEVDDELGSSPSPTIV* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0630 520 PANTHER REPLICATION FACTOR A 1, RFA1 62 409 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso10g0630 520 Gene3D - 326 448 IPR012340 -
Gso10g0630 520 Pfam Domain of unknown function DUF223 91 178 IPR003871 -
Gso10g0630 520 CDD RPA1_DBD_A_like 70 155 - -
Gso10g0630 520 SUPERFAMILY Nucleic acid-binding proteins 350 433 IPR012340 -
Gso10g0630 520 Gene3D - 57 157 IPR012340 -
Gso10g0630 520 SUPERFAMILY Nucleic acid-binding proteins 169 286 IPR012340 -
Gso10g0630 520 MobiDBLite consensus disorder prediction 1 41 - -
Gso10g0630 520 MobiDBLite consensus disorder prediction 495 520 - -
Gso10g0630 520 Gene3D - 162 292 IPR012340 -
Gso10g0630 520 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 62 409 - -
Gso10g0630 520 CDD RPA1_DBD_B_like 188 286 - -
Gso10g0630 520 SUPERFAMILY Nucleic acid-binding proteins 58 157 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0630 Gso-Chr10 7587736 7597273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0630 52 407 Core DNA Replication Machinery Family AT5G08020 21.173 5.21e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0630 - - gmx:102669742 798.89