Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0610 ATGGCGGAAGAACACCGATGTGAACCTCCCGAAGGTCACCGACTCTGCGTCAACAACTGCGGCTTCTTCGGTAGCACCGCCACGATGAACCTCTGCTCCAAATGCTACAGCGCGATCCGTTTGAAGGAGCAAGAAGAAGCGTCGACGAAATCCACAATCGAAACCGCGCTCTCTTCTGCCTCCTCGGCGAAACCGTCGTCGTCCACGTCACCTCCGCCGTCGGCGGTCGATGTGCTCATGGAATCTCCACCGCCGTCTGCGGCGGAGGTTGAGGTTGCTGTCACGGTCACGGTCGCGGTGGCGTCGAGTTCTATTTCCATAAACTCAGGTTCGGTTGCGCAACCGAACCGGTGTGCCACGTGTCGGAAGCGCGTGGGGCTGACCGGGTTCAAGTGCAGGTGCGGAGTGACGTTCTGCGGGGCCCACAGGTACCCGGAGGAGCACGCGTGCGGGTTCGATTTCAAGACAGTGGGAAGAGAGGAGATTGCACGTGCCAACCCCGTGATCAAAGCGGAGAAGCTGCGGAGGATTTGA 534 0.5993 MAEEHRCEPPEGHRLCVNNCGFFGSTATMNLCSKCYSAIRLKEQEEASTKSTIETALSSASSAKPSSSTSPPPSAVDVLMESPPPSAAEVEVAVTVTVAVASSSISINSGSVAQPNRCATCRKRVGLTGFKCRCGVTFCGAHRYPEEHACGFDFKTVGREEIARANPVIKAEKLRRI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0610 177 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Gso10g0610 177 SUPERFAMILY AN1-like Zinc finger 113 172 IPR035896 -
Gso10g0610 177 Gene3D - 1 72 - -
Gso10g0610 177 MobiDBLite consensus disorder prediction 50 75 - -
Gso10g0610 177 PANTHER BNAC06G14100D PROTEIN 1 177 - -
Gso10g0610 177 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Gso10g0610 177 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Gso10g0610 177 Gene3D - 98 173 IPR035896 -
Gso10g0610 177 MobiDBLite consensus disorder prediction 50 76 - -
Gso10g0610 177 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Gso10g0610 177 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 177 - -
Gso10g0610 177 ProSiteProfiles Zinc finger AN1-type profile. 112 158 IPR000058 GO:0008270
Gso10g0610 177 SMART AN1_Zf_4 118 155 IPR000058 GO:0008270
Gso10g0610 177 Pfam AN1-like Zinc finger 118 154 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0610 Gso-Chr10 7282846 7284429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0610 1 177 C2H2 Transcription Factor Family AT3G52800 52.809 5.85e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0610 - - gmx:100813749 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1607 19 45038689 45040047 Gso10g0610 10 7282846 7284429 PCT
Gso3g1630 3 42293035 42294383 Gso10g0610 10 7282846 7284429 PCT