LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g0597	ATGGACCAACAACATAAAGTGATTCCTCTGCTGCTGCTTCTTTTCCAAGTTCTGCTTGTAGCATCTCAGACAGATAGTCAAGATTATTCTGGCCTAAATTCTCTTACGGAATCCTGGAGTAACAAGCCACAAAATTGGGTGGGTCCAGATCCTTGTGGCAGTGGATGGGATGGAATTCGTTGCAGCAATTCAAAAATTACCCAATTGAGACTACCAGGCTTGAATTTGGCAGGACAACTGTCTTCGGCAATTCAGTCTTTATCCGAACTAGATACTTTGGATCTTTCTTACAACACAGGCTTGACAGGAACAATTCCACAAGAAATTGGGAACTTGAAAAAGCTAAAATCCCTATCATTGGTTGGTTGTGGTTTCTCTGGTCCTATTCCGGATTCAATAGGGTCTTTAAAGCAGCTGACATTTCTAGCACTTAATTCTAATAGGTTCAGTGGAACTATACCACGCTCTCTTGGCAATCTATCAAATATTGATTGGCTTGATCTTGCTGAAAACCAGCTTGAAGGGACTATTCCTGTCTCTGATGACCAAGGAAGACCAGGCCTTGACCTTCTCCTTAAGGCACAACACTTTCATATGGGGAGCAATAAGCTCACTGGTACAATACCAGAAGAACTCTTTAACTCCAGTATGCATCTAAAACACCTGCTTTTCGACCACAATCAACTAGAGGGTGGTATTCCTGTCTCCCTTAGTACTGTGAGCACATTGGAAGTAGTGCGCTTTGATAAGAATGCATTAACTGGGGGAGTGCCTGCAAACTTAAGCAAACTCGGAAATCTAAGTGAGATCTATTTATCTCACAATAACCTGAATGGATTTCTGCCCGATTTTACTGGAATGAATAGTCTCACCTATGTGGACCTGAGTGACAATGATTTGAATGCTTCTAATATTCCTTCATGGGTTACAACTCTGCCAGGACTGACAACGGTGATACTTGGGCAGAACCTGCTCGGTGGCACATTAAATCTTAGTGGCTACAGCAACAGTCTGCAACTCATTAATTTGGAGGATAATGAAATAACAGAACTTGATCCACAAAACAACCTACCAAATTTTGAGCTAAGACTAGCTAACAATCCACTTTGTCGTGAAAGTGGAGCTTCTGAAAAGAGTTACTGCAAAGTTCCAGTACCCAATCCTTCATTTTATTCAACACCACCAAACAATTGTTCACCTTCATCTTGCGGTTCAGATCAGGTTTCAAGTCCAAATTGTAATTGTGCATTTCCCTATTCTGGACTTCTCATTTCAAGAGCTCTTAGTTTCTCAAACTTTAGCAATGTAAGTTACTATCGGGAGCTTGAGCAGTCTCTGATGGATACTTTTCGCAACCAAAGCATTCCAGTGGATTCAGTTTCTCTTAGTAACCCCTTCAGGAATACTACTTCTGATAATTTTGAATTGACTCTTGATGTCTTCCCTTCGCAAACCGATCGTTTCAACACAACTGGAGTTTTAACTATTGCTTTTCTGTTAAGCAATCAAATTTACAAACCCCCAGAGTTCTTCTCCCCTTACTTCTTCAAGGGTGCTAGTTATGAATACTATGGAGGAGAACCAAAAGGATCAAAGTCATCATCACATGTAGGGGTTATAGTTGGTGCAGTAGTTGCTGTTGTGGTCTTTGTTGTACTGGCATTCTTTGCAGGGAGGTATGCCCTTCGCCAGAAAACAAGAGCAAGAAGATCTTCAGAGTTGAACCCTTTTGCAAATTGGGAACAGAATACGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGCGCGATGGTTTTCTTTTGATGACCTAAGGAAATACAGCACCAACTTCTCAGAAACCAATACTATTGGATCTGGAGGCTATGGAAAGGTTTATCAAGGAACTCTTCCCTCTGGGGAGTTGGTCGCCATCAAACGGGCTGCAAAAGAGTCTATGCAGGGTGCCGTTGAGTTTAAAACCGAGATCGAACTTCTATCAAGGGTCCATCATAAGAATCTCGTTGGTCTTGTTGGTTTCTGTTTTGAGAAGGGTGAACAAATGCTGGTGTATGAGCACATTCCAAATGGCACTTTGATGGATAGTCTCTCGGGAAAGTCTGGAATCTGGATGGATTGGATAAGGAGGCTTAAAGTAGCATTAGGTGCAGCCAGGGGTCTGGCCTATCTTCATGAACTTGCTGACCCACCTATCATACACAGGGACATCAAGTCAAGCAATATCCTACTTGATCATCACCTCAATGCAAAAGTTGCAGATTTTGGTCTCTCTAAACTTCTTGTTGATAGTGAAAGGGGCCATGTCACTACTCAAGTGAAAGGGACAATGGGATACTTGGATCCTGAATATTACATGACCCAGCAGTTGACTGAAAAGAGTGATGTATATAGCTATGGAGTGCTAATGCTGGAACTAGCAACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAGGTACTGAGGGTAATGGACACATCAAAAGATTTATACAACCTTCATTCCATTCTAGATCCAACCATAATGAAAGCAACAAGACCAAAAGGTTTAGAGAAGTTTGTGATGTTGGCAATGAGGTGTGTCAAAGAATATGCAGCAGAGAGGCCTACAATGGCTGAGGTTGTAAAAGAGATCGAGAGCATAATTGAGCTAGTTGGATTGAACCCCAATTCTGAATCAGCTACAACATCAGAAACTTACGAGGAAGCAAATGCAGGAAATGCTCAACATCCTTACAGGGAAGAAGATTTTAGCTATAGTGGAATTTTTCCATCAACAAGGGTAGAACCCCAATAG	2799	0.4176	MDQQHKVIPLLLLLFQVLLVASQTDSQDYSGLNSLTESWSNKPQNWVGPDPCGSGWDGIRCSNSKITQLRLPGLNLAGQLSSAIQSLSELDTLDLSYNTGLTGTIPQEIGNLKKLKSLSLVGCGFSGPIPDSIGSLKQLTFLALNSNRFSGTIPRSLGNLSNIDWLDLAENQLEGTIPVSDDQGRPGLDLLLKAQHFHMGSNKLTGTIPEELFNSSMHLKHLLFDHNQLEGGIPVSLSTVSTLEVVRFDKNALTGGVPANLSKLGNLSEIYLSHNNLNGFLPDFTGMNSLTYVDLSDNDLNASNIPSWVTTLPGLTTVILGQNLLGGTLNLSGYSNSLQLINLEDNEITELDPQNNLPNFELRLANNPLCRESGASEKSYCKVPVPNPSFYSTPPNNCSPSSCGSDQVSSPNCNCAFPYSGLLISRALSFSNFSNVSYYRELEQSLMDTFRNQSIPVDSVSLSNPFRNTTSDNFELTLDVFPSQTDRFNTTGVLTIAFLLSNQIYKPPEFFSPYFFKGASYEYYGGEPKGSKSSSHVGVIVGAVVAVVVFVVLAFFAGRYALRQKTRARRSSELNPFANWEQNTNSGTAPQLKGARWFSFDDLRKYSTNFSETNTIGSGGYGKVYQGTLPSGELVAIKRAAKESMQGAVEFKTEIELLSRVHHKNLVGLVGFCFEKGEQMLVYEHIPNGTLMDSLSGKSGIWMDWIRRLKVALGAARGLAYLHELADPPIIHRDIKSSNILLDHHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSYGVLMLELATARRPIEQGKYIVREVLRVMDTSKDLYNLHSILDPTIMKATRPKGLEKFVMLAMRCVKEYAAERPTMAEVVKEIESIIELVGLNPNSESATTSETYEEANAGNAQHPYREEDFSYSGIFPSTRVEPQ*	933

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g0597	932	Gene3D	Ribonuclease Inhibitor	283	385	IPR032675	-
	Gso10g0597	932	ProSitePatterns	Protein kinases ATP-binding region signature.	616	642	IPR017441	GO:0005524
	Gso10g0597	932	SMART	serkin_6	610	883	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g0597	932	Gene3D	Ribonuclease Inhibitor	184	282	IPR032675	-
	Gso10g0597	932	MobiDBLite	consensus disorder prediction	893	932	-	-
	Gso10g0597	932	Gene3D	Ribonuclease Inhibitor	17	183	IPR032675	-
	Gso10g0597	932	PANTHER	RECEPTOR-LIKE PROTEIN 55	2	915	-	-
	Gso10g0597	932	PANTHER	RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED	2	915	-	-
	Gso10g0597	932	Pfam	Leucine rich repeat	242	300	IPR001611	GO:0005515
	Gso10g0597	932	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	730	742	IPR008271	GO:0004672\|GO:0006468
	Gso10g0597	932	SUPERFAMILY	L domain-like	42	371	-	-
	Gso10g0597	932	SUPERFAMILY	Protein kinase-like (PK-like)	589	878	IPR011009	-
	Gso10g0597	932	Gene3D	Transferase(Phosphotransferase) domain 1	686	902	-	-
	Gso10g0597	932	Pfam	Protein kinase domain	611	877	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g0597	932	ProSiteProfiles	Leucine-rich repeat profile.	337	358	IPR001611	GO:0005515
	Gso10g0597	932	ProSiteProfiles	Protein kinase domain profile.	610	883	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g0597	932	CDD	STKc_IRAK	616	882	-	-
	Gso10g0597	932	Gene3D	Phosphorylase Kinase; domain 1	580	685	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g0597	Gso-Chr10	6980306	6989755	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g0597	10	932	Receptor kinase-like Gene Family	AT5G49760	52.737	0.0	919

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Gso10g0597		Pkinase	4.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g0597	-		-	gmx:100786172	1704.88