Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0584 ATGGACTTGCAGTTGAAGCAATGGAGAAACCAGCATGAGTCAGAGCAAGAACAAGAACATTATTCCCCAAACATGGCAAAATTTCTATCTCAACAACAACACCCACCACCATTTCCCTCTGCACTCCCTCTCTTTGTACCTGAACAACCCAACACCAAAGTCAGCACCTTGTCAGCATTTTCTGATTCCACATTACCCTCTTCTCCCAGATTTCCCAGAATGGAGAGTTGCTTCAGCTTTGCACAATGGCAAGAGCTTGAGTTGCAGGCTCTGATATTCAGGTACATGCTGGCCGGTGCTCCTGTTCCTCCTGAGCTCCTTCTACCAATCAAGAAAAGCTTCCTTCAACTTTATCACCCTCCTAATTTGTTGGAATCAGGGTACTACTGGCGAAGAGAAGCACTGGATCCGGAGCCGGGGCGGTGCCGGAGGACCGACGGCAAGAAGTGGCGGTGCTCGAAGGACACGGTGGCAGGTCAGAAGTACTGCGACCGCCACATGCACCGTGGCCGGAACCGTTCAAGAAAGCCTGTGGAACAACGTGAAGGATCTCTTTCTGCTATAGACTCTGTTTCTTCTTCACACTCTGCTTCATTCAATCTCCTTCACCTCGGTCAAAGTTCCGCTGTGGCCAAGAGTGACAGCAAGAGCTTGTCTAGAAACCGTGATCATGTGGATGGGGATGGCAAATCAAATGGCCATGTCTTGAGGCATTTCTTTGATGATTGGCCAAGGACACTGCAAGAGCCTGACAATGGTGAAAGCAATGGAAGCCAGAACAACAACTCAGGAAAATGTCTTTCTATGTCAACACCAGGAATCGATCCCTCGGATGTGTCGTTGAAATTGACCACTGGCTATGGAGAGGACGCGTGCCAGGCAGCTTCGGTGGGAGGACCACTTGCAGAGGCATTGAGATCATCCACCACCAGCTCCACTTCTTCACCAACCAGTGTTCTGCTTCAGTTGCCTCCTAGTTCTGCTTGTGAGACCAGCTTCATTAGCACCTAA 1011 0.4985 MDLQLKQWRNQHESEQEQEHYSPNMAKFLSQQQHPPPFPSALPLFVPEQPNTKVSTLSAFSDSTLPSSPRFPRMESCFSFAQWQELELQALIFRYMLAGAPVPPELLLPIKKSFLQLYHPPNLLESGYYWRREALDPEPGRCRRTDGKKWRCSKDTVAGQKYCDRHMHRGRNRSRKPVEQREGSLSAIDSVSSSHSASFNLLHLGQSSAVAKSDSKSLSRNRDHVDGDGKSNGHVLRHFFDDWPRTLQEPDNGESNGSQNNNSGKCLSMSTPGIDPSDVSLKLTTGYGEDACQAASVGGPLAEALRSSTTSSTSSPTSVLLQLPPSSACETSFIST* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0584 336 MobiDBLite consensus disorder prediction 1 40 - -
Gso10g0584 336 Pfam QLQ 78 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso10g0584 336 Pfam WRC 137 179 IPR014977 -
Gso10g0584 336 MobiDBLite consensus disorder prediction 21 35 - -
Gso10g0584 336 MobiDBLite consensus disorder prediction 1 20 - -
Gso10g0584 336 ProSiteProfiles WRC domain profile. 136 180 IPR014977 -
Gso10g0584 336 MobiDBLite consensus disorder prediction 210 273 - -
Gso10g0584 336 MobiDBLite consensus disorder prediction 216 248 - -
Gso10g0584 336 MobiDBLite consensus disorder prediction 163 189 - -
Gso10g0584 336 ProSiteProfiles QLQ domain profile. 77 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso10g0584 336 SMART QLQ_2 76 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso10g0584 336 MobiDBLite consensus disorder prediction 249 273 - -
Gso10g0584 336 PANTHER GROWTH-REGULATING FACTOR 3 8 336 - -
Gso10g0584 336 PANTHER - 8 336 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0584 Gso-Chr10 6769498 6772799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0584 1 327 GRF Transcription Factor Family AT3G52910 42.268 3.50e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso10g0584 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0584 - - gmx:100814300 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1597 19 44939378 44942932 Gso10g0584 10 6769498 6772799 PCT
Gso3g1617 3 42136084 42139547 Gso10g0584 10 6769498 6772799 PCT
Gso10g0584 10 6769498 6772799 Gso19g1597 19 44939378 44942932 PCT
Gso10g0584 10 6769498 6772799 Gso3g1617 3 42136084 42139547 PCT