Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0582 ATGCAGAAGCGGAGGGCAGGGAGGAAGAAGTTCCACGAGACACGACACCCGGTGTACAAGGGAGTGAGGCAGAGGAACGGGAAGTGGGTAAGCGAGCTGCGACAACCTAACAACAAAAACGCGCGGGTGTGGCTCGGAACATTCCCGCACCCCGACATGGCTGCTATAGCGTACGATGTTGCCGCCTTGGCTTTCAAGGGCGACAGTGCTTCCTTAAACTTCCCGAACGCCGCCACCTCGTTTCCCCGCCTTAACTCGCGGACGTGTTCCGTTAGGGCCATTCAGTTTGCGGCGACGCAGGCGGCGGAGAAGCATTTTTCTTGTGTAGAGTCTCAACAACTCCAAAGGGAGGGATCAGGCTCCGGAAGCTTCTCTTTGGACGATGATTCTTCGGAGTTTTCGTCCCAAGGAAGGTTCTTTTGGGATGAAGAGGAAGTGTTTAACATGCCGGAGTTGCTGAACTGCATGGCGGAAGCGCTGATTATCACACCGCCGGCGTTGGAAAGAGGGTTCAATTGGGTTGGTGGCGAAACGACTGTGGATTTGACTCTGTGGTGA 558 0.552 MQKRRAGRKKFHETRHPVYKGVRQRNGKWVSELRQPNNKNARVWLGTFPHPDMAAIAYDVAALAFKGDSASLNFPNAATSFPRLNSRTCSVRAIQFAATQAAEKHFSCVESQQLQREGSGSGSFSLDDDSSEFSSQGRFFWDEEEVFNMPELLNCMAEALIITPPALERGFNWVGGETTVDLTLW* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0582 185 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gso10g0582 185 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Gso10g0582 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 185 - -
Gso10g0582 185 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 185 - -
Gso10g0582 185 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Gso10g0582 185 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Gso10g0582 185 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Gso10g0582 185 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Gso10g0582 185 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Gso10g0582 185 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0582 Gso-Chr10 6730600 6731597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0582 3 185 AP2-EREBP Transcription Factor Family AT4G25490 45.652 1.79e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g0582 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0582 - - gmx:100813230 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g0582 10 6730600 6731597 Gso19g1594 19 44871632 44872811 PCT
Gso10g0582 10 6730600 6731597 Gso3g1613 3 42066442 42067613 PCT