Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0580 ATGGCTTCCCTCAATCACCTTCGAATTTCACTCTCAACACAACTTTTCATACACATAGACACCATGTATTCCGGCAATGCAAGCAGCAGCAGCAGCAGAGGCTCTTCCGGATCCGGAAAGTACCGCGGGGTGAGGCGTAGAACCAGCGGAAAATGGGTGTCGGAGATTCGCGAGCCGAAGAAGCCTAACAGAATTTGGTTAGGCACGTTCCCCACGCCGGAAATGGCCGCCGTGGCGTATGACGTTGCCGCTTTGGCTCTCAAGGGTAAGGATGCTGGGCTCAACTTTCCGGACTCCGCTTCTTCGCTTCCTGTCCCGGCTTCGCTCTCTGCGCGCGACATTCAGGTGGCGGCTGCAGCGGCCGCGGCTGCTGCCGGAGCAGCGAATGATGCTATGAGGACACAAACAGCAAATAATAACTTTTCAGAGGCACAAGAGAATCAAACTGGGATGAGTAACCAGTTTGTGGATGAGGATTTGATCTTTGACATGCCCAATGTTCTGGTCAACATGGCTCAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTTTGGAACCGAATAGCCCAGAAAACACCGAACAAGAGACAAACCTGTGGAATTTCCCTTAA 615 0.5236 MASLNHLRISLSTQLFIHIDTMYSGNASSSSSRGSSGSGKYRGVRRRTSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAGLNFPDSASSLPVPASLSARDIQVAAAAAAAAAGAANDAMRTQTANNNFSEAQENQTGMSNQFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGLEPNSPENTEQETNLWNFP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0580 204 MobiDBLite consensus disorder prediction 189 204 - -
Gso10g0580 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 26 204 - -
Gso10g0580 204 MobiDBLite consensus disorder prediction 25 49 - -
Gso10g0580 204 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Gso10g0580 204 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Gso10g0580 204 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Gso10g0580 204 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Gso10g0580 204 MobiDBLite consensus disorder prediction 184 204 - -
Gso10g0580 204 CDD AP2 40 99 IPR001471 GO:0003700|GO:0006355
Gso10g0580 204 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Gso10g0580 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 204 - -
Gso10g0580 204 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Gso10g0580 204 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0580 Gso-Chr10 6673954 6675271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0580 41 204 AP2-EREBP Transcription Factor Family AT2G36450 60.694 1.84e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g0580 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0580 - - gmx:100811614 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1594 19 44871632 44872811 Gso10g0580 10 6673954 6675271 PCT
Gso3g1613 3 42066442 42067613 Gso10g0580 10 6673954 6675271 PCT