Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0579 ATGGAAATGGAAGATCATCAGCATCAGCACCACCATCATCACTTTGGCATGAACGATCTAAGGCAAGTGGTGAATAACGGGCCGAGGCCGGCCCATACCACCTTCCCCTCCATGCCGCCGCACCCCACGGAGGAGCTTTTCCCCGGCCACCACCACCGTAATCTCACTCCTTTACCTACTCATCATCCCCAACAACAACAGCACTTCGAGGTTATGATGTTTGGTCGAGACATAATGCCACCTGGCCTTCACGACTTTGCTTCCACACCCCATGATTCTGCTGTTGCTACCACCACCATCACCCTACCCACTCCACCGGTTACTTGCGGCTTTGATGCCGCTGAGGGTGCAGGTTGCATCGGTGGAGACCCCTTCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAATCACAAAGGACCCTTATGGGATGAAGTCTCTAGGATCATGTGTGAAGAACATGGATATCAAAGGAGTGGGAAAAAATGCAGAGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACAAAAGAAGGTAAGGCAGGAAGGCATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAATAGTAACACAGTTTCAGTCCCAGAAACCAATGTTGTTGTTGGCAGCATTCATTTTCAAGGCCCTTCTCAAACAAATCAAGATAATAATAAGTTTCAATCTCACAACAACAACAACAACAGGCATTGTGATAGCCTCAGCCTCACTAACTCCACTAATTTTGACACATCAACATCTGAAGGTCATGATGGCAATGATCACAGTATGGAGAATGAGTCCATGGAGAAGAGGATAAAGAGGAAGAGTGGGAGGAGTTGGAAGGTGAAGATAAAGGACTTCATTGACTCACAAATGAGGAAGCTGGTGGAGAAGCAAAAGGAGTGGTTGGATAAGCTTGTGAAGACACTTGAAGAGAAGGAGAAGGAGAGAATGCTAAGAGAGGAAGAATGGAGGAAGCAAGAGGCAAACAGGTTAGAGAGGGAGCAAAAGTTCTGGGCCAAAGAGAGAGCATGGATTGAAGCAAGAGATGCTGCTTTGATGGAGGCTTTGCATAAGTTAACTGGAAGAGAAATAATGAAGGTTGAAACTGATCCTGAGGGTACTATAAATGTAATGACTGCAGCTGAAGTTCAAAACCAGAATAACGAAGATGAGAGTGAAATTTTGAACAGCAGTAATGTTATCAGAGGTGCTGATAGCTGGCAAGAATCTGAGATCACAAGACTTGAACAGCTGAGAGCTGAGATGGAGACAAGGTTTCCATATAGTGAAATTTCAGAAGAGGTTTCATGGGATGTAGTAGCAACAAAGATGGCTGATTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATCAACAAGGAAGAGAAGAATAGCAAGAATCGCAAGGAAAACTTATCTAGAAACTGCTTTTACTTCAAGAACAATCATGAGGATCAACAACAATCTTCTCTATACGATCAAGGAAGTGCCTATTGTGATGATGATGTCAATGAGCAAGGGAAAGAGATTGAGAGGCTTCAAACAAATAATGGTTCTTCTTCACCTTCAAAATCCAATATTGTTGGAAATGTTGTTCCTTCTGATAGTTGCTTTCCCTTCCTGATGGGTGCTGATCAGGGTGGAAACTTGTGGGAGAACTATGGCTTAAAGCTCAATAAAGAAAATCAAAATCATTGA 1785 0.4353 MEMEDHQHQHHHHHFGMNDLRQVVNNGPRPAHTTFPSMPPHPTEELFPGHHHRNLTPLPTHHPQQQQHFEVMMFGRDIMPPGLHDFASTPHDSAVATTTITLPTPPVTCGFDAAEGAGCIGGDPFTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNTVSVPETNVVVGSIHFQGPSQTNQDNNKFQSHNNNNNRHCDSLSLTNSTNFDTSTSEGHDGNDHSMENESMEKRIKRKSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQKFWAKERAWIEARDAALMEALHKLTGREIMKVETDPEGTINVMTAAEVQNQNNEDESEILNSSNVIRGADSWQESEITRLEQLRAEMETRFPYSEISEEVSWDVVATKMADFGYERSALMCKEKWESINKEEKNSKNRKENLSRNCFYFKNNHEDQQQSSLYDQGSAYCDDDVNEQGKEIERLQTNNGSSSPSKSNIVGNVVPSDSCFPFLMGADQGGNLWENYGLKLNKENQNH* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0579 594 Pfam Myb/SANT-like DNA-binding domain 128 214 IPR044822 -
Gso10g0579 594 Pfam Myb/SANT-like DNA-binding domain 429 511 IPR044822 -
Gso10g0579 594 MobiDBLite consensus disorder prediction 236 276 - -
Gso10g0579 594 MobiDBLite consensus disorder prediction 236 298 - -
Gso10g0579 594 CDD GT1 128 193 - -
Gso10g0579 594 SMART sant 125 188 IPR001005 -
Gso10g0579 594 SMART sant 427 490 IPR001005 -
Gso10g0579 594 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 28 586 - -
Gso10g0579 594 Gene3D - 431 492 - -
Gso10g0579 594 Gene3D - 129 191 - -
Gso10g0579 594 ProSiteProfiles Myb-like domain profile. 430 488 IPR001005 -
Gso10g0579 594 MobiDBLite consensus disorder prediction 277 296 - -
Gso10g0579 594 CDD GT1 431 495 - -
Gso10g0579 594 PANTHER - 28 586 - -
Gso10g0579 594 Coils Coil 319 346 - -
Gso10g0579 594 MobiDBLite consensus disorder prediction 21 64 - -
Gso10g0579 594 ProSiteProfiles Myb-like domain profile. 127 186 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0579 Gso-Chr10 6632071 6635690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0579 9 590 Trihelix Transcription Factor Family AT5G03680 43.092 6.86e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso10g0579 Myb_DNA-bind_4 6.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0579 - - gmx:100799670 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1721 2 40817606 40818626 Gso10g0579 10 6632071 6635690 GST
Gso19g1593 19 44852449 44855914 Gso10g0579 10 6632071 6635690 PCT
Gso3g1612 3 42049035 42052560 Gso10g0579 10 6632071 6635690 PCT
Gso10g0579 10 6632071 6635690 Gso19g1593 19 44852449 44855914 PCT
Gso10g0579 10 6632071 6635690 Gso3g1612 3 42049035 42052560 PCT