Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0574 ATGGAGAATTCGCGTAGACCGTTCGATAGATCGCGAGAACCGGGTCCGAAGAAGCCCCGGTTGATGGAAGAGCTGGATCGGGCTTCGAATTCGGGTGCCCGACAGTTTCATCAGCGACAAGTGGCTTCTGGGATCACCACGTTGTCGTCTGCAAGGTTTAGAACAAACGACAGAGATCTTGAAAGCAGTGATTTTGGTCGCCGGGGCGGTGCCGGTGGCGGTGGCGGCGGTTATCAGCCGCAGCCACTGCCATTTCAGGAGCTTGTGGCTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAATCAAGCTGCGGAGAAGGCCATTGCAGCCACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCATCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGTTATTGAGAAGGAATTGGGCTTCACTCCTGCAGTCAATGGCTCATCTTCTGCTTCTGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTGAATCCCAAATACTTAGAAAGACAGCGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGTTGATGATATCACTGGAGCGATTTCAAATACAAATGATGACCCAGAGATGCCTGGTAGAACTTTGGGCGTTGGACGACCATGGGTGGATCCTAGTGTTACTGTTAACATCCATTCACGTGAAAATGAGCAATGCGCTCACAGAGGTGCATTCAATGATTCTGTTCTGGAAAAGAGCATTGGTGCATCCTATGGAAGCAATGAATATGGTTCCAATATTTCAAGGAATTTGGGCTTGGGTATCCGCCGACCTGGTGGTAGGGTGACTGAGTCAGGACATGACAAAAGTTGGTACAGCAAATCTGGTGTCGTTGCAGGGACCATGTCTGGGCAAGGAAATGGTTTAGGTCTTAAGTATAGTTTTTTGAATACTGAAGCACCAAAGTCCATGATTTTGGATGTGCATCATCAGCCTACACAGAACATAAGTAGCACACGTACCAGTGTGATCTCTGCGAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCCTGACTGTTCATGGTGCATCCACTGTTAGCAACTTGAGCAAAAATAGTTGGACTGCTGATGATGAGAATTTGGAAGCTGAAGATTGCCTCGAAATCAGAAATCCTTTTCGGGCTAATGTTGATAGAGAAATGTCCATTGAATCTCAAGCCACTGAAAAGAAACAATTACCTTCATCTCATCATCATCCATCACTATCATGGCAATTGCAGGAGCAGCAATCTATTGATGAATTGAATCGGAAGGCAGGTCACTCGGACAGATTTGTGTCCACACATGGTGCCATACCAGCCAATGCAAATTCTTCTGCTGCCAGGATGGTCAATCAGCCTTTCCTGTCAAATGCAACAATAGGATTGCCAGGAATTGCAGGCCAATTTCATTCTTTGGGAGCTGAAAACCCTTCAGGGCAGTCACCTTTACAACAAAGGTCTCCGTCACCGCCAGGTCCATTCTCTTCAACGACTTTTCAGGCAAGGCATCAGCACCAACTGGGCTCTTCTCACAATGAAGTTACTGTTAAGACTGAGAAGCCACCCATGTCCGAAGTGCCTTTAGCCAGAGAAACTAAAAGTAATCTGGATACAGGGAATCTTCCATCTCGGTTAGGGGTTCGGCCTTCACGGTCAGGTGGCCCTTCCCCTGCCACATTAATTTCTTCAGTGTCCAAAATTGCATCACCATCTTCGTTAGGTCCTTCCAGCGATAATGTATCTGTTCTTCCAAAAATACCTCTAAGAAAGGCTGGACCACCTAGGGCATCTACTCTACCACCAGCTTCCTCTAATGTCAGCAGTGCCTCAGCCCAGACATCAAGTGATACCAATAATACCTTAAATCCAATTGCAAACCTTTTAAGCTCTTTAGTTGCAAAAGGTTTGATATCTGCAGAAACAGAGTCACCAGCTAAGGTGCCTTCAGAGTTGCTTACTCGATTGGAAGAACAAAGCGATAGCATTACCACCACTAGCTCTTTGCCTGTGGCTTCAGTGTCTGGTTCTGCCACTGTCCCTGTTCCTTCTACCAAGGATGAGGTAGACGACACTGCAAGAACGCCTATATCATTGTCTGAATCAACCAGCCCAGGAATCAGAAATCTCATTGGCTTAGAGTTTAAGCCTGATGTAATTCGAGAATTCCATTCATCTGTAGTTAGTGGATTATTTGATAATTTTCCACATCAGTGCAGCATATGTGGCCATAAGCTTAGATTCCAAGAACAGTTCAATAGACACTTGAAGTGGCATGCCACAAGAGAAAGCGAAGAAAATGGTTTAATTAGTGCATCTAGATGGTATCTGAAGTCAAATGATTGGATTCTTGGCAAGGCTGAGTATCCATCTGAGAATGAGTTTACTGATTCTGTAGATACATATGGCAAAGAAGCAGACAAAAGTCAAGAGGATGCTATGGTTCTAGCAGATGAAAAACAATGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATTTTTACTGTCAGGAAACTGGTGAGTGGATGTTCAAAGGGGCTGTTTACCTGGCCAACTCTGATAGCAAAAGTGAGATGGGAATTAGAGATGTGAGTACTGGAAGGGGTCCTATCATTCATGCAAGTTGCTTATCAGATAACTCAGTTTCCAGTGTCCTCGAGACGGGACAGGATTAA 2928 0.4508 MENSRRPFDRSREPGPKKPRLMEELDRASNSGARQFHQRQVASGITTLSSARFRTNDRDLESSDFGRRGGAGGGGGGYQPQPLPFQELVAQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQVIEKELGFTPAVNGSSSASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVDDITGAISNTNDDPEMPGRTLGVGRPWVDPSVTVNIHSRENEQCAHRGAFNDSVLEKSIGASYGSNEYGSNISRNLGLGIRRPGGRVTESGHDKSWYSKSGVVAGTMSGQGNGLGLKYSFLNTEAPKSMILDVHHQPTQNISSTRTSVISASWKNSEEEEYTWDEMNSGLTVHGASTVSNLSKNSWTADDENLEAEDCLEIRNPFRANVDREMSIESQATEKKQLPSSHHHPSLSWQLQEQQSIDELNRKAGHSDRFVSTHGAIPANANSSAARMVNQPFLSNATIGLPGIAGQFHSLGAENPSGQSPLQQRSPSPPGPFSSTTFQARHQHQLGSSHNEVTVKTEKPPMSEVPLARETKSNLDTGNLPSRLGVRPSRSGGPSPATLISSVSKIASPSSLGPSSDNVSVLPKIPLRKAGPPRASTLPPASSNVSSASAQTSSDTNNTLNPIANLLSSLVAKGLISAETESPAKVPSELLTRLEEQSDSITTTSSLPVASVSGSATVPVPSTKDEVDDTARTPISLSESTSPGIRNLIGLEFKPDVIREFHSSVVSGLFDNFPHQCSICGHKLRFQEQFNRHLKWHATRESEENGLISASRWYLKSNDWILGKAEYPSENEFTDSVDTYGKEADKSQEDAMVLADEKQCLCVLCGELFEDFYCQETGEWMFKGAVYLANSDSKSEMGIRDVSTGRGPIIHASCLSDNSVSSVLETGQD* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0574 975 MobiDBLite consensus disorder prediction 215 242 - -
Gso10g0574 975 MobiDBLite consensus disorder prediction 683 704 - -
Gso10g0574 975 MobiDBLite consensus disorder prediction 640 664 - -
Gso10g0574 975 ProSiteProfiles CID domain profile. 84 212 IPR006569 -
Gso10g0574 975 MobiDBLite consensus disorder prediction 1 80 - -
Gso10g0574 975 ProSiteProfiles Zinc finger C2H2 type domain profile. 821 848 IPR013087 -
Gso10g0574 975 MobiDBLite consensus disorder prediction 554 704 - -
Gso10g0574 975 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 577 972 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gso10g0574 975 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 576 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gso10g0574 975 MobiDBLite consensus disorder prediction 263 284 - -
Gso10g0574 975 MobiDBLite consensus disorder prediction 215 236 - -
Gso10g0574 975 MobiDBLite consensus disorder prediction 745 785 - -
Gso10g0574 975 MobiDBLite consensus disorder prediction 575 602 - -
Gso10g0574 975 Pfam CID domain 93 202 IPR006569 -
Gso10g0574 975 ProSitePatterns Zinc finger C2H2 type domain signature. 823 843 IPR013087 -
Gso10g0574 975 CDD CID_Pcf11 89 201 - -
Gso10g0574 975 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 577 972 - -
Gso10g0574 975 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 576 - -
Gso10g0574 975 SMART 558neu5 87 209 IPR006569 -
Gso10g0574 975 MobiDBLite consensus disorder prediction 1 27 - -
Gso10g0574 975 SUPERFAMILY ENTH/VHS domain 87 209 IPR008942 -
Gso10g0574 975 MobiDBLite consensus disorder prediction 745 766 - -
Gso10g0574 975 MobiDBLite consensus disorder prediction 474 499 - -
Gso10g0574 975 MobiDBLite consensus disorder prediction 31 53 - -
Gso10g0574 975 Gene3D - 84 209 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0574 Gso-Chr10 6557978 6565355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0574 783 960 C2H2 Transcription Factor Family AT4G04885 36.464 8.77e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0574 CID 5.4e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0574 K14400 - gmx:100807857 1867.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1590 19 44813742 44820543 Gso10g0574 10 6557978 6565355 PCT
Gso3g1608 3 42008096 42014243 Gso10g0574 10 6557978 6565355 PCT
Gso10g0574 10 6557978 6565355 Gso19g1590 19 44813742 44820543 PCT
Gso10g0574 10 6557978 6565355 Gso3g1608 3 42008096 42014243 PCT