Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso10g0574 | ATGGAGAATTCGCGTAGACCGTTCGATAGATCGCGAGAACCGGGTCCGAAGAAGCCCCGGTTGATGGAAGAGCTGGATCGGGCTTCGAATTCGGGTGCCCGACAGTTTCATCAGCGACAAGTGGCTTCTGGGATCACCACGTTGTCGTCTGCAAGGTTTAGAACAAACGACAGAGATCTTGAAAGCAGTGATTTTGGTCGCCGGGGCGGTGCCGGTGGCGGTGGCGGCGGTTATCAGCCGCAGCCACTGCCATTTCAGGAGCTTGTGGCTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAATCAAGCTGCGGAGAAGGCCATTGCAGCCACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCATCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGTTATTGAGAAGGAATTGGGCTTCACTCCTGCAGTCAATGGCTCATCTTCTGCTTCTGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTGAATCCCAAATACTTAGAAAGACAGCGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGTTGATGATATCACTGGAGCGATTTCAAATACAAATGATGACCCAGAGATGCCTGGTAGAACTTTGGGCGTTGGACGACCATGGGTGGATCCTAGTGTTACTGTTAACATCCATTCACGTGAAAATGAGCAATGCGCTCACAGAGGTGCATTCAATGATTCTGTTCTGGAAAAGAGCATTGGTGCATCCTATGGAAGCAATGAATATGGTTCCAATATTTCAAGGAATTTGGGCTTGGGTATCCGCCGACCTGGTGGTAGGGTGACTGAGTCAGGACATGACAAAAGTTGGTACAGCAAATCTGGTGTCGTTGCAGGGACCATGTCTGGGCAAGGAAATGGTTTAGGTCTTAAGTATAGTTTTTTGAATACTGAAGCACCAAAGTCCATGATTTTGGATGTGCATCATCAGCCTACACAGAACATAAGTAGCACACGTACCAGTGTGATCTCTGCGAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCCTGACTGTTCATGGTGCATCCACTGTTAGCAACTTGAGCAAAAATAGTTGGACTGCTGATGATGAGAATTTGGAAGCTGAAGATTGCCTCGAAATCAGAAATCCTTTTCGGGCTAATGTTGATAGAGAAATGTCCATTGAATCTCAAGCCACTGAAAAGAAACAATTACCTTCATCTCATCATCATCCATCACTATCATGGCAATTGCAGGAGCAGCAATCTATTGATGAATTGAATCGGAAGGCAGGTCACTCGGACAGATTTGTGTCCACACATGGTGCCATACCAGCCAATGCAAATTCTTCTGCTGCCAGGATGGTCAATCAGCCTTTCCTGTCAAATGCAACAATAGGATTGCCAGGAATTGCAGGCCAATTTCATTCTTTGGGAGCTGAAAACCCTTCAGGGCAGTCACCTTTACAACAAAGGTCTCCGTCACCGCCAGGTCCATTCTCTTCAACGACTTTTCAGGCAAGGCATCAGCACCAACTGGGCTCTTCTCACAATGAAGTTACTGTTAAGACTGAGAAGCCACCCATGTCCGAAGTGCCTTTAGCCAGAGAAACTAAAAGTAATCTGGATACAGGGAATCTTCCATCTCGGTTAGGGGTTCGGCCTTCACGGTCAGGTGGCCCTTCCCCTGCCACATTAATTTCTTCAGTGTCCAAAATTGCATCACCATCTTCGTTAGGTCCTTCCAGCGATAATGTATCTGTTCTTCCAAAAATACCTCTAAGAAAGGCTGGACCACCTAGGGCATCTACTCTACCACCAGCTTCCTCTAATGTCAGCAGTGCCTCAGCCCAGACATCAAGTGATACCAATAATACCTTAAATCCAATTGCAAACCTTTTAAGCTCTTTAGTTGCAAAAGGTTTGATATCTGCAGAAACAGAGTCACCAGCTAAGGTGCCTTCAGAGTTGCTTACTCGATTGGAAGAACAAAGCGATAGCATTACCACCACTAGCTCTTTGCCTGTGGCTTCAGTGTCTGGTTCTGCCACTGTCCCTGTTCCTTCTACCAAGGATGAGGTAGACGACACTGCAAGAACGCCTATATCATTGTCTGAATCAACCAGCCCAGGAATCAGAAATCTCATTGGCTTAGAGTTTAAGCCTGATGTAATTCGAGAATTCCATTCATCTGTAGTTAGTGGATTATTTGATAATTTTCCACATCAGTGCAGCATATGTGGCCATAAGCTTAGATTCCAAGAACAGTTCAATAGACACTTGAAGTGGCATGCCACAAGAGAAAGCGAAGAAAATGGTTTAATTAGTGCATCTAGATGGTATCTGAAGTCAAATGATTGGATTCTTGGCAAGGCTGAGTATCCATCTGAGAATGAGTTTACTGATTCTGTAGATACATATGGCAAAGAAGCAGACAAAAGTCAAGAGGATGCTATGGTTCTAGCAGATGAAAAACAATGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATTTTTACTGTCAGGAAACTGGTGAGTGGATGTTCAAAGGGGCTGTTTACCTGGCCAACTCTGATAGCAAAAGTGAGATGGGAATTAGAGATGTGAGTACTGGAAGGGGTCCTATCATTCATGCAAGTTGCTTATCAGATAACTCAGTTTCCAGTGTCCTCGAGACGGGACAGGATTAA | 2928 | 0.4508 | MENSRRPFDRSREPGPKKPRLMEELDRASNSGARQFHQRQVASGITTLSSARFRTNDRDLESSDFGRRGGAGGGGGGYQPQPLPFQELVAQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQVIEKELGFTPAVNGSSSASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVDDITGAISNTNDDPEMPGRTLGVGRPWVDPSVTVNIHSRENEQCAHRGAFNDSVLEKSIGASYGSNEYGSNISRNLGLGIRRPGGRVTESGHDKSWYSKSGVVAGTMSGQGNGLGLKYSFLNTEAPKSMILDVHHQPTQNISSTRTSVISASWKNSEEEEYTWDEMNSGLTVHGASTVSNLSKNSWTADDENLEAEDCLEIRNPFRANVDREMSIESQATEKKQLPSSHHHPSLSWQLQEQQSIDELNRKAGHSDRFVSTHGAIPANANSSAARMVNQPFLSNATIGLPGIAGQFHSLGAENPSGQSPLQQRSPSPPGPFSSTTFQARHQHQLGSSHNEVTVKTEKPPMSEVPLARETKSNLDTGNLPSRLGVRPSRSGGPSPATLISSVSKIASPSSLGPSSDNVSVLPKIPLRKAGPPRASTLPPASSNVSSASAQTSSDTNNTLNPIANLLSSLVAKGLISAETESPAKVPSELLTRLEEQSDSITTTSSLPVASVSGSATVPVPSTKDEVDDTARTPISLSESTSPGIRNLIGLEFKPDVIREFHSSVVSGLFDNFPHQCSICGHKLRFQEQFNRHLKWHATRESEENGLISASRWYLKSNDWILGKAEYPSENEFTDSVDTYGKEADKSQEDAMVLADEKQCLCVLCGELFEDFYCQETGEWMFKGAVYLANSDSKSEMGIRDVSTGRGPIIHASCLSDNSVSSVLETGQD* | 976 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 215 | 242 | - | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 683 | 704 | - | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 640 | 664 | - | - | |
Gso10g0574 | 975 | ProSiteProfiles | CID domain profile. | 84 | 212 | IPR006569 | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Gso10g0574 | 975 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 821 | 848 | IPR013087 | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 554 | 704 | - | - | |
Gso10g0574 | 975 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 577 | 972 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Gso10g0574 | 975 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 1 | 576 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 263 | 284 | - | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 215 | 236 | - | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 745 | 785 | - | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 575 | 602 | - | - | |
Gso10g0574 | 975 | Pfam | CID domain | 93 | 202 | IPR006569 | - | |
Gso10g0574 | 975 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 823 | 843 | IPR013087 | - | |
Gso10g0574 | 975 | CDD | CID_Pcf11 | 89 | 201 | - | - | |
Gso10g0574 | 975 | PANTHER | RNA POLYMERASE II-BINDING DOMAIN PROTEIN | 577 | 972 | - | - | |
Gso10g0574 | 975 | PANTHER | RNA POLYMERASE II-BINDING DOMAIN PROTEIN | 1 | 576 | - | - | |
Gso10g0574 | 975 | SMART | 558neu5 | 87 | 209 | IPR006569 | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Gso10g0574 | 975 | SUPERFAMILY | ENTH/VHS domain | 87 | 209 | IPR008942 | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 745 | 766 | - | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 474 | 499 | - | - | |
Gso10g0574 | 975 | MobiDBLite | consensus disorder prediction | 31 | 53 | - | - | |
Gso10g0574 | 975 | Gene3D | - | 84 | 209 | IPR008942 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso10g0574 | Gso-Chr10 | 6557978 | 6565355 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso10g0574 | 783 | 960 | C2H2 Transcription Factor Family | AT4G04885 | 36.464 | 8.77e-31 | 128 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso10g0574 | CID | 5.4e-13 | CL0020 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso10g0574 | K14400 | - | gmx:100807857 | 1867.05 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso19g1590 | 19 | 44813742 | 44820543 | Gso10g0574 | 10 | 6557978 | 6565355 | PCT | |
Gso3g1608 | 3 | 42008096 | 42014243 | Gso10g0574 | 10 | 6557978 | 6565355 | PCT | |
Gso10g0574 | 10 | 6557978 | 6565355 | Gso19g1590 | 19 | 44813742 | 44820543 | PCT | |
Gso10g0574 | 10 | 6557978 | 6565355 | Gso3g1608 | 3 | 42008096 | 42014243 | PCT |