LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g0572	ATGATGGAAATGCCTGCCAGAAGATCCAACTATTCGCTCCTCAGCCAAATTCCCGACGACCAGTTCTCCTCCGCCGCCGCTCCCTCATCCTCCGGCGACGGCAAGGCCGGCCGTGCCGGAAAGTCCGACCGTGCCGCCTTCGAATGGGACCTCGTCGCTGATCACCGGGCCGCCAACCGGATCGGAAACGTCTACTCCTCGATAGGCCTGCAGCGCCAGTCCAGCGGGAGCAGCTACGGCGAGAGCTCGCTCTCCGGCGGCGGCGACTTCTACGCTCCGACGATCTCCACGGCGGCGGCCAGCGACGTCGACGCCTTCGGCTACCTCCACGACGAGCGAAGCAAGTTCTCGGAGGCGGCGCCGGCGAGGATCGCCGGCTCCTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAGAGCTACCAGCTGCAGCTCGCGCTCGCTCTGCGGCTCTCGTCCGACGCCACGTGCGCCGATGATCCCAATTTCCTCGATCCGGTGCCGGACGACGGCGCGCTGCGGCTCTTGTGGTCGGCCGAGGCAGTTTCGCATAGGTTTTGGGTGAATGGTTGCCTATCATACTCTGACAAAATTCCAGATGGCTTTTACCTAATTCACGGGATGGATTCCTTTGTCTGGACCATGTGCACTGATCTGCATGAAAATGGACGAATTCCATCAGTTGATATGCTGAAGTCTGTGAATCCCTGTGTCGTTCCTTCACTCGAAGTAGTTATGGTGGATCGATGCAGTGACCCCAGCTTAAGAGATCTGCAAAATAGTGTTCATAACATTTCTTTCACTAGCATAACAACAACAGATGTTGTAGATAAACTTTCCAAGCTGGTTTGCAACCGTATGGGGGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGAATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGTAGTCTATCTGTTGGCCTCTGCCGGCATCGTGCTATATTATTCAAAGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGATTGAGAGGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCACGACTTAAACCAGCTGAAACTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTCGGACTGTGTGTCTCTTGAGCTTGTCTTTGACAACAATTCTGCAGAACAGTTTGATGGGAAGTGCAAAGACAGGAATAACCCTAGGCCAATTTTGACTGACAGCAATAGAAGTTCTCACCTTCCTCTGCATCCTCAAGATTCTCATCCAAGCTCACGGGAACAAGGTTCCGAAACATATCAATCATGTAACCCTCCTCAGAACATTGTAGACTCGACTGTGGGAAAGTATCCACCACCAATAAAGCATAAGCGTCCTGCTGGTATACCAACCCCATTAGCACTTACAAATACTAATGATGACATGATTGAGGGCAAGAGGTTTGCTGAAGGAAGTCAACTGATTCCTAGCAAACATGCTCGAGAGCTTAACCTTGACATGGAGGATTTGGACATACCATGGTGCGATCTTGTTTTAAGAGAGAAAATAGGGTCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGACGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCTTGCTGAGCGCTTCAAGGAATTCCTAAGGGAGGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAGGTCTGGTGCCAAAGAAGTATTGGATGAGCGGCGTAGGCTTGGTATGGCTTATGACGTGGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACATTTCTCTCATCCAAATCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAGGTTCTTCGTGATGAGCCATCGAATGAGAAGTCTGATGTTTACAGCTTTGGTGTAATCTTATGGGAGCTTGCAACATTGCAACAGCCATGGATTAATTTAAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGGAAAAGGCTAGAGATCCCACATGATGTGAATCCTCAAGTAGCTGCACTAATTGATGCTTGCTGGGCGAATGAGCCTTGGAAACGTCCTTCTTTTGCCAGTATTATGGATTCTTTGAGGCCATTGCTCAAACCCCCTACACCTCAACCTGGTTGTCCAAGCATGCCATTACTGACCTGA	2511	0.4867	MMEMPARRSNYSLLSQIPDDQFSSAAAPSSSGDGKAGRAGKSDRAAFEWDLVADHRAANRIGNVYSSIGLQRQSSGSSYGESSLSGGGDFYAPTISTAAASDVDAFGYLHDERSKFSEAAPARIAGSSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPVPDDGALRLLWSAEAVSHRFWVNGCLSYSDKIPDGFYLIHGMDSFVWTMCTDLHENGRIPSVDMLKSVNPCVVPSLEVVMVDRCSDPSLRDLQNSVHNISFTSITTTDVVDKLSKLVCNRMGGSASVGEDHFFSIWRNCSNDLKDCLGSVVIPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDASSCLVRFGIEREYLVDLIGKPGNLSEPDSLLNGPSSISFSSPLRFPRLKPAETTIDFRSLAKQYFSDCVSLELVFDNNSAEQFDGKCKDRNNPRPILTDSNRSSHLPLHPQDSHPSSREQGSETYQSCNPPQNIVDSTVGKYPPPIKHKRPAGIPTPLALTNTNDDMIEGKRFAEGSQLIPSKHARELNLDMEDLDIPWCDLVLREKIGSGSFGTVHRAEWNGSDVAVKILMEQDFLAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRSGAKEVLDERRRLGMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWINLNPAQVVAAVGFKGKRLEIPHDVNPQVAALIDACWANEPWKRPSFASIMDSLRPLLKPPTPQPGCPSMPLLT*	837

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g0572	836	PANTHER	MAP KINASE KINASE KINASE-LIKE PROTEIN	121	824	-	-
	Gso10g0572	836	Pfam	Protein tyrosine and serine/threonine kinase	563	816	IPR001245	GO:0004672\|GO:0006468
	Gso10g0572	836	CDD	STKc_MAP3K-like	568	816	-	-
	Gso10g0572	836	Gene3D	Transferase(Phosphotransferase) domain 1	641	825	-	-
	Gso10g0572	836	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	121	824	-	-
	Gso10g0572	836	ProSiteProfiles	Protein kinase domain profile.	562	820	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g0572	836	SUPERFAMILY	Protein kinase-like (PK-like)	545	815	IPR011009	-
	Gso10g0572	836	Pfam	Ethylene-responsive protein kinase Le-CTR1	179	384	-	-
	Gso10g0572	836	SMART	serkin_6	562	820	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g0572	836	Gene3D	Phosphorylase Kinase; domain 1	555	640	-	-
	Gso10g0572	836	PRINTS	Tyrosine kinase catalytic domain signature	636	649	IPR001245	GO:0004672\|GO:0006468
	Gso10g0572	836	PRINTS	Tyrosine kinase catalytic domain signature	677	695	IPR001245	GO:0004672\|GO:0006468
	Gso10g0572	836	PRINTS	Tyrosine kinase catalytic domain signature	724	734	IPR001245	GO:0004672\|GO:0006468
	Gso10g0572	836	PRINTS	Tyrosine kinase catalytic domain signature	743	765	IPR001245	GO:0004672\|GO:0006468
	Gso10g0572	836	PRINTS	Tyrosine kinase catalytic domain signature	787	809	IPR001245	GO:0004672\|GO:0006468
	Gso10g0572	836	MobiDBLite	consensus disorder prediction	456	496	-	-
	Gso10g0572	836	MobiDBLite	consensus disorder prediction	442	518	-	-
	Gso10g0572	836	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	683	695	IPR008271	GO:0004672\|GO:0006468
	Gso10g0572	836	ProSitePatterns	Protein kinases ATP-binding region signature.	568	589	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g0572	Gso-Chr10	6525313	6535091	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g0572	2	827	MAP Kinase Kinase Kinase	AT5G03730	64.344	0.0	971

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Gso10g0572		PK_Tyr_Ser-Thr	1.8e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g0572	K14510		-	gmx:100775768	1675.99

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1588	19	44780016	44796017	Gso10g0572	10	6525313	6535091	PCT
	Gso3g1606	3	41990541	42001477	Gso10g0572	10	6525313	6535091	PCT
	Gso10g0572	10	6525313	6535091	Gso19g1588	19	44780016	44796017	PCT
	Gso10g0572	10	6525313	6535091	Gso3g1606	3	41990541	42001477	PCT