Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0567 ATGGAATCAGCAGCAACAGCATTGAACAACATCATCAACAACAACAACACTGTTCCTGCAGTGTCGCCACCACCACCACCACCACCACCATCCTCAGTGCCTCAGCCAATGAACATGAATGTCAACATGAACATGAACGTGGTCAACACCACAGAAGGAACAACACCAACACCAACCCCAACAACAATGGTTGTTCCTGCAGTGCCAGCTCCAACAACGACAACATTAGCAGTAGCAACAACAACACCAGGGAGTTTGGATTTGTTTGGGAAGAAGAAGAGAGGGAGGCCTAGAAAGTATGATGCAGATGGGAACCTGAGAGTGAGTGCAAGACCAACACCAACACCACCATCGGGTTTTACTTTGTCCACACCTTCTGAGTACTCTTCTTCCAAAAGAGGGCGCGGCAAACACTACAACACAACTTTTGCCAACAACAGCTACCAACAACAACTCTATTCTTCTTCTTTGGGTGATGTGTTTGCAATCACAGCTGCTGGTGATTTTGTAGCGCATGTGTTGAATGCTTATACTGGAGAGGATGTTGCTGGAAAGATCTTGTCATTTGCCCAGAAGGGTCCAAGAGGAATTTGCATTCTCTCTGCCAATGGAGCTATCTCGAATGTCACCATACGCCAACCTGGTTCTTCTGGTGGCATTTTGACTTATGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCATTCACAGTTGTTGACAACAGTGGCATGAAAAGCCGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGGGTCATAGGTGGTGGTGTTGCTGGACTTTTAACTGCTGCTGGCCCCATTCAGATTGTTGTAGGAAGCTTCATGCAAAATTGTTGCAAGACCCAAAAGAGGAAGTATCAACGTGAACAACAGATAGTGGCGGCCACCCCTACTTCAGCTGGTCCAGAAATAGTGACAGCAGCAATACCTATCTCACAAGCAAATGCTGCTGATGGTGAGAACTTTCTGATACCTATACCTATCTATCAGATTCCAGACCAAAACCAGAGAGAATCTATCAGTGTTTCAAGTGACAAACAGAACCTAGATGCTACTCCTGATGCTGCTGCTACTTGGAATGGTTCTGAGGAATATTCAGACCAGAGGACTTCTCCAGACATCAACATATCTTTGCCAGATGAATAG 1176 0.46 MESAATALNNIINNNNTVPAVSPPPPPPPPSSVPQPMNMNVNMNMNVVNTTEGTTPTPTPTTMVVPAVPAPTTTTLAVATTTPGSLDLFGKKKRGRPRKYDADGNLRVSARPTPTPPSGFTLSTPSEYSSSKRGRGKHYNTTFANNSYQQQLYSSSLGDVFAITAAGDFVAHVLNAYTGEDVAGKILSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVVDNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMQNCCKTQKRKYQREQQIVAATPTSAGPEIVTAAIPISQANAADGENFLIPIPIYQIPDQNQRESISVSSDKQNLDATPDAAATWNGSEEYSDQRTSPDINISLPDE* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0567 391 MobiDBLite consensus disorder prediction 347 391 - -
Gso10g0567 391 ProSiteProfiles PPC domain profile profile. 166 308 IPR005175 -
Gso10g0567 391 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 11 390 - -
Gso10g0567 391 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 390 IPR039605 GO:0003680
Gso10g0567 391 MobiDBLite consensus disorder prediction 87 135 - -
Gso10g0567 391 MobiDBLite consensus disorder prediction 1 18 - -
Gso10g0567 391 MobiDBLite consensus disorder prediction 347 385 - -
Gso10g0567 391 CDD DUF296 172 284 IPR005175 -
Gso10g0567 391 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 289 - -
Gso10g0567 391 MobiDBLite consensus disorder prediction 111 135 - -
Gso10g0567 391 MobiDBLite consensus disorder prediction 19 34 - -
Gso10g0567 391 MobiDBLite consensus disorder prediction 1 34 - -
Gso10g0567 391 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
Gso10g0567 391 Gene3D - 171 304 - -
Gso10g0567 391 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0567 Gso-Chr10 6410843 6415601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0567 91 358 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.715 3.62e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0567 - - gmx:100812673 629.017