Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0559 ATGGAGGGGAATTATGGGAGCACAAGACGTTATGTTCCCCGAGCAGATTCTTCCTTGAGCTTCCTTTACAACTACAACTACACCCCTTATCCAGGAATGGAAGTGAAGCAACAAACACTGGCTGGCACAAGTTCATCCATGGAAAAAATGAACTGCGGGAACCAGGAGAAGAAGAAGCGATTAACAAGTGACCAGTTAGATTCGTTGGAGAATAGTTTTCAGAAGGAGATCAAGTTAGATCCTGATAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAGCACTTGTACGATTCGCTTAAACAGGAATTTGATGTCATATCCAAGGAAAAACAGAAGCTCGGGGAAGAGGTAATGAAGTTGAAGACTATGCTGAGAGAGCAAGCTTCTAGAACCCAACAACAAGTGTCAACAGGATACACAGAAATCTCTGGGGATCAAGAAACAGTGGAAAGCACGTCAGAGGCACTGCGTTGCTCCAAACGCGGAACACTGCACCAGCAGCAGCAGAATAATAATAATATTGGAGAAGGAAACTGTTCCTTCACTTTGGAAGATCATTACAACACAGTGCCAGTACCCTATTGGCCTGGGGTCCCTTATTATCATCCCTAA 678 0.4454 MEGNYGSTRRYVPRADSSLSFLYNYNYTPYPGMEVKQQTLAGTSSSMEKMNCGNQEKKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLGEEVMKLKTMLREQASRTQQQVSTGYTEISGDQETVESTSEALRCSKRGTLHQQQQNNNNIGEGNCSFTLEDHYNTVPVPYWPGVPYYHP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0559 225 Coils Coil 104 138 - -
Gso10g0559 225 SUPERFAMILY Homeodomain-like 43 114 IPR009057 -
Gso10g0559 225 Gene3D - 48 117 - -
Gso10g0559 225 SMART HOX_1 55 116 IPR001356 GO:0003677
Gso10g0559 225 Pfam Homeobox associated leucine zipper 112 146 IPR003106 GO:0006355|GO:0043565
Gso10g0559 225 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gso10g0559 225 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gso10g0559 225 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gso10g0559 225 MobiDBLite consensus disorder prediction 151 170 - -
Gso10g0559 225 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gso10g0559 225 Pfam Homeodomain 57 111 IPR001356 GO:0003677
Gso10g0559 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 215 IPR045224 GO:0003700
Gso10g0559 225 CDD homeodomain 57 113 IPR001356 GO:0003677
Gso10g0559 225 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 7 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0559 Gso-Chr10 6291740 6294269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0559 53 157 Homeobox Transcription Factor Family AT2G36610 64.602 1.65e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso10g0559 Homeodomain 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0559 - - gmx:100794565 418.698