Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0550 ATGGCGGTTCCCGCGACGGTCGCCGCCGTTCCGGCATCGCTTTACGTCGGAGACCTCCACCCTGAAGTCGTAGACCACCACCTCTTCGAGGCTTTCGCGGAGTTCAAGACCATGGATTCCGTTCGCGTCTGCAGAGACCGCGTCACAATGAAATCGCTCTGTTACGGTTACGTCAACTTCAAGTCTCAGCAAGATGCAATTCGTGCAATGAAGTTGAAAAACAATTCTTATCTGAATGGAAAAGTGATAAGGGTCATGTGGTCACATCCTGATCCTAGTGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGGATCCATAGATAATGCGGGGTTGCATGATTTATTTCAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGGGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAATGCCATTGAGAAGCTGAATGGCTCTACTGTGGGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCTATGATGCCAAATATACAAATTTGTACATTAAAAACTTGGACTCAGATATTACAGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAAAAATTATTAGCTTGGTTATATCAAAGGATGACAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGAGAATCCTGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATTAAAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCATCGTCAATTTGAGGAGAAACGTAAGGAACAAATATTGAAATATCAGGCATCTAACTTGTATGTGAAGAACATTGATGACGATGTTACCGATAAAGAACTGCGAGATCTGTTTAGTTCATGTGGCACTATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCAGAGGAAGCTAATAAAGCTGTGAGGTCTTTTAATGGATGCATGTTCCACCGTAAACCATTGTATATTGCTATTGCTCAGAGGAAAATGGACAGGAAAACACAGTTGAATCTCCATTATGCACCGCAACAAACAGGATTGGATGGATCTTCAACTCCAGTTATCCCTGGTGGATTTCCACCTTACTTCTATCATAGTGTTGCTTCACAGATGTTTCAATCTGGGCTGTTGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGACTCTGTGCCTCCCACTAGATCATTTCAACAATCACAGGTTCCTAACTTTACTAGGCATCATAGGCAAAACAGGAGCAGGATGAATGGGAATGTGAATTCACTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAATACTATCAGGCAGTAGAGTACTTGGCAGTCTAG 1470 0.4259 MAVPATVAAVPASLYVGDLHPEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPPYFYHSVASQMFQSGLLYQPLGLRSGWRANDSVPPTRSFQQSQVPNFTRHHRQNRSRMNGNVNSLGKAHSGVYIPQYYQAVEYLAV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0550 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Gso10g0550 489 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Gso10g0550 489 CDD RRM4_I_PABPs 294 371 - -
Gso10g0550 489 Coils Coil 263 283 - -
Gso10g0550 489 Gene3D - 101 181 IPR012677 -
Gso10g0550 489 Gene3D - 5 100 IPR012677 -
Gso10g0550 489 MobiDBLite consensus disorder prediction 435 452 - -
Gso10g0550 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Gso10g0550 489 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 466 IPR006515 GO:0003723
Gso10g0550 489 MobiDBLite consensus disorder prediction 435 462 - -
Gso10g0550 489 PANTHER POLYADENYLATE-BINDING PROTEIN 5 483 - -
Gso10g0550 489 SMART rrm2_1 295 367 IPR003954 GO:0003676
Gso10g0550 489 SMART rrm2_1 101 173 IPR003954 GO:0003676
Gso10g0550 489 SMART rrm2_1 13 86 IPR003954 GO:0003676
Gso10g0550 489 SMART rrm2_1 192 264 IPR003954 GO:0003676
Gso10g0550 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Gso10g0550 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Gso10g0550 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Gso10g0550 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Gso10g0550 489 Gene3D - 184 276 IPR012677 -
Gso10g0550 489 Gene3D - 277 380 IPR012677 -
Gso10g0550 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Gso10g0550 489 SUPERFAMILY RNA-binding domain, RBD 292 382 IPR035979 GO:0003676
Gso10g0550 489 CDD RRM2_I_PABPs 98 174 IPR045305 -
Gso10g0550 489 SUPERFAMILY RNA-binding domain, RBD 184 277 IPR035979 GO:0003676
Gso10g0550 489 PANTHER RNA BINDING PROTEIN 5 483 - -
Gso10g0550 489 CDD RRM1_I_PABPs 13 92 - -
Gso10g0550 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Gso10g0550 489 SMART rrm1_1 295 367 IPR000504 GO:0003723
Gso10g0550 489 SMART rrm1_1 13 86 IPR000504 GO:0003723
Gso10g0550 489 SMART rrm1_1 101 173 IPR000504 GO:0003723
Gso10g0550 489 SMART rrm1_1 192 264 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0550 Gso-Chr10 6160181 6164746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0550 10 489 Eukaryotic Initiation Factors Gene Family AT2G36660 53.814 7.36e-178 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0550 K13126 - gmx:100798828 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1563 19 44577121 44582052 Gso10g0550 10 6160181 6164746 PCT
Gso3g1582 3 41765610 41770253 Gso10g0550 10 6160181 6164746 PCT
Gso10g0550 10 6160181 6164746 Gso19g1563 19 44577121 44582052 PCT
Gso10g0550 10 6160181 6164746 Gso3g1582 3 41765610 41770253 PCT