Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0546 ATGGGCACAATGTTGGTGCCACCATGGCTTGAGCCACTCCTAAACACATCCTTCTTCAATGTGTGTCGGATTCACGGAGATGCCGCGAGGAGCGAATGTAACATGTTTTGTCTCGACTGCAATGAGAATGCGTTTTGCTTCTATTGCCGTTCCTCAAAACACAAGGATCACCAAGTCATTCAGATACGGAGATCTTCGTATCACGATGTAGTGAGGGTGGCGGAAATTCAGAAAGTGTTGGACATTAGTGGAGTTCAAACATATGTGATCAACAGTGCCAGAGTTTTGTTTCTGAATGAGAGGCCTCAACCAAAGTCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGGTGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGTTTTACTTTGGATGCTAAAAATGAGGCATCAACAATGGAGGGTATGTCAAGGAGATCGGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACACCTTCTCCACCTGCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGCTCCTAA 627 0.4514 MGTMLVPPWLEPLLNTSFFNVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDASFTLDAKNEASTMEGMSRRSVSSRHHQEEELREGSQQDMYPATPSPPASNARRRKGIPHRAPFGS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0546 208 SMART bboxneu5 17 62 IPR000315 GO:0008270
Gso10g0546 208 MobiDBLite consensus disorder prediction 162 178 - -
Gso10g0546 208 Gene3D Classic Zinc Finger 17 81 - -
Gso10g0546 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 4 207 - -
Gso10g0546 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 4 207 - -
Gso10g0546 208 Pfam PLATZ transcription factor 63 134 IPR006734 -
Gso10g0546 208 MobiDBLite consensus disorder prediction 152 208 - -
Gso10g0546 208 SUPERFAMILY B-box zinc-binding domain 19 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0546 Gso-Chr10 6120446 6122505 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Gso10g0546 PLATZ 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0546 - - gmx:100809455 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1558 19 44550220 44552484 Gso10g0546 10 6120446 6122505 PCT
Gso3g1578 3 41745581 41747776 Gso10g0546 10 6120446 6122505 PCT
Gso10g0546 10 6120446 6122505 Gso19g1558 19 44550220 44552484 PCT
Gso10g0546 10 6120446 6122505 Gso3g1578 3 41745581 41747776 PCT