Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0540 ATGGAATCCACCGCCACCACCGTTTCCCCCGATTCCGAAAACGACACCACCAACACGCGAGTGAACGGCTACGTCGTTTACACTCGCCGCAAGCGCACCCTCCTCACCCTCCATTCCGGTAATGACGCCGCCAAGAGGCTCAGAACAGCTGAAATCAAAGTCGAAGCTCGCAACGACGATGACGACGTCGTTTTCAAGCGCCCCAAGCTCGAGTCTGAATTAACGGAGGAGGAATTGAAAACGACGTCGTCGTCGAAGAAGATCATTGTCGTCCACAAGAAACCCGCCACCGTCAAGGAGCTCTTCCAAACCGGCTTGCTCGATGGGGTACCGGTCGTTTACGTCGGTTGCAAAAAGGATTCAACTACGGAATTGCGAGGTGAAATCAAAGATGGGGGGATCTTGTGCTCATGCAGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATTCATGCGTGCAACATATATAAGAGGGCAGCACAATATATTTGCCTTGAAAATGGGAAGAGCATGCTTGAACTAATGAGAGCATGCAGGGCAGCTCCACTGCATACATTGGAGGCGACCATTCAAAATTTCATTAATTCTCCACCTGAGAAGAAATATTTTACTTGCAAAAATTGCAGAGGGTGTTTCCCTTCTTCCAATGTGGAAAGAGTGGGGCTTTTATGTCTATCTTGCGTGGAATCAAGGAAATCTGAAAAAAGTTCTATTCATGCTGTTGGCAAAAGAATCAGGTCCCCTCGGCCAGTATTATTCTCCCGTTCATGTTCATGTTGTGCTTCTGAATCTGAACTATGTATCACTCCTCAAACTAAGAAACAGTGGAAGACAAGAACAAAGTCATCAAAACTGTCGGTAAAATTGAAGACTGCACCAATTACTTCAAAGTGTTTATCTCCACAAAATAAAAGTCAGTGGAGGATCTCTAAAAGGTATCAACGATTACATAAATTAATTTTTGAAGAGGATGGATTGCCTAATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAGGGTATCAAAACATGCTCTGGAATTGTCTGTCGATGCTGCAACACTGAGATCAGCCCCTCACAATTTGAGGTCCATGCAGGCTGGGCTTCTCGTAGGAAACCTTATGCATTCATCTACACGTCAAATGGGGTGTCACTCCATGAGTTAGCGATATTTCTCTCAAAAGATCACAAATGCACTACAAAGCAGAATGATTATGTATGTGTTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGTCCTAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCTCGGGGTGAGTGGTACTGTCAAATTTGTCAACACACATTCCTCAGAGAAAGGCCTGTGTTACACAATGCCGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCTATTGAGCAGATTGCCAAGAGATGCATTCGCATTGTAAAAGACATAGGAGCTGAGATGGGTGGATGTGTTTTGTGCAGGAGTTCTGACTTCAGCAGATCAGGATTTGGTCCTCGCACAATTATAATTTGTGATCAGTGTGAAAAGGAATATCATGTGGGCTGCTTGAGGGATCATAAGATGGCATATTTAAAGGAGTTGCCAGAAGGGGATTGGTTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAATCTCCTGATTAGGGTGGCTGAGAGACTTCCTGAATCTCTTTTGGATGTTATAAAGAAGAAGCAAGTGGGAAGATGTTTAGAACCCCTTAATGAAATTGATGTACGATGGAAACTTCTTAATGGAAAAATTGCATCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGTCCATGTTTCATGAATGCTTTGATCCTATAGTTGATCCAGCTGCCGGACGTGACCTTATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTGATTGTCAATTCATCTGTGGTATCCGCGGGCATGGTTCGAATTTTCGGTAGAGATATTGCCGAACTTCCTTTAGTTGCAACAAGATATAAGAACCGTGGAAAGGGCTACTTCCAAACACTTTTCGCGTGCATTGAGAGGCTGCTGGCTTTTTTGAATGTGAAAAATCTTGTGCTACCAGCTGCTGAAGAAGCAGCATCTATATGGACAGAAAAATTCGGGTTTAGCAAGATGAAACCCAACCAGCTTACCAACTACAGAATGAACTGCCATCAAATCATGGCATTCAAAGGGACAAATATGCTTCATAAAACGGTGCCTCAATGTCGGGTCATCAATACTCAATTGTGA 2343 0.4388 MESTATTVSPDSENDTTNTRVNGYVVYTRRKRTLLTLHSGNDAAKRLRTAEIKVEARNDDDDVVFKRPKLESELTEEELKTTSSSKKIIVVHKKPATVKELFQTGLLDGVPVVYVGCKKDSTTELRGEIKDGGILCSCSLCNGRRVIPPSQFEIHACNIYKRAAQYICLENGKSMLELMRACRAAPLHTLEATIQNFINSPPEKKYFTCKNCRGCFPSSNVERVGLLCLSCVESRKSEKSSIHAVGKRIRSPRPVLFSRSCSCCASESELCITPQTKKQWKTRTKSSKLSVKLKTAPITSKCLSPQNKSQWRISKRYQRLHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTCSGIVCRCCNTEISPSQFEVHAGWASRRKPYAFIYTSNGVSLHELAIFLSKDHKCTTKQNDYVCVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLRERPVLHNADAVAAGRVEGVDPIEQIAKRCIRIVKDIGAEMGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWFCCNDCTRIHSTLENLLIRVAERLPESLLDVIKKKQVGRCLEPLNEIDVRWKLLNGKIASPETRPLLLEAVSMFHECFDPIVDPAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMVRIFGRDIAELPLVATRYKNRGKGYFQTLFACIERLLAFLNVKNLVLPAAEEAASIWTEKFGFSKMKPNQLTNYRMNCHQIMAFKGTNMLHKTVPQCRVINTQL* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0540 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 561 IPR013083 -
Gso10g0540 780 SUPERFAMILY FYVE/PHD zinc finger 496 560 IPR011011 -
Gso10g0540 780 SMART PHD_3 502 559 IPR001965 -
Gso10g0540 780 SMART PHD_3 414 455 IPR001965 -
Gso10g0540 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 477 IPR013083 -
Gso10g0540 780 Pfam Tify domain binding domain 127 182 IPR032308 -
Gso10g0540 780 Pfam Tify domain binding domain 351 398 IPR032308 -
Gso10g0540 780 ProSitePatterns Zinc finger PHD-type signature. 415 454 IPR019786 -
Gso10g0540 780 PANTHER AUTOIMMUNE REGULATOR 45 776 - -
Gso10g0540 780 SUPERFAMILY FYVE/PHD zinc finger 400 457 IPR011011 -
Gso10g0540 780 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 658 743 IPR016181 -
Gso10g0540 780 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 45 776 - -
Gso10g0540 780 ProSiteProfiles Zinc finger PHD-type profile. 412 457 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0540 Gso-Chr10 6034476 6046066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0540 64 780 PHD Transcription Factor Family AT2G36720 49.204 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0540 - - gmx:100798276 1560.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1556 19 44503265 44511967 Gso10g0540 10 6034476 6046066 PCT
Gso10g0540 10 6034476 6046066 Gso19g1556 19 44503265 44511967 PCT