Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0513 ATGCAAGTCCAAGAGGAATTACTTGTGGTTTCCAAGGATCACACCCAAATGATGATGATCAAGGGCAAAAGAACCAAGCGTCAAAGAGCACCATCCCCTCTTAGGCTAGCCATGCCTTATAATTCAACCTCAAGTAATAGTAGCACCAACAATTCCATTGATAGTGCCACAACCTCCTTACCCTCTCCCTCTCCCACCAACAACACAATTGAATTTCGAGAAGACCAAGACATGGCGAATTGTCTCATCCTTCTCGCTCAAGGCAGATACCACGTGGCAGCACCAACGCCGCATCACAACAATAACAACAACGACGACGACAACCTCAAAAAGTCAACAAGCCTATACCTTTACCAGTGCAAGACTTGCAACAGATGCTTCCCTTCATTCCAAGCACTTGGAGGACACAGAGCAAGTCACAAGAAGCCTAAGCAAAACGGCACCTTTTCATCAGAAGCAGTTACTAATTTCATTGAAGAGAATAATGATCGTTATGACCCCACCACAAGTACCACCCTCTCTTTGAAAACACCAAATGGTGTTAGTAATTTGTGTGGCACCATCACTGCCACAACAACAACAACAACAACAAAAGCTAATAAGGTTCACGAGTGTTCTATCTGTGGTGCTGAATTCTCATCAGGGCAAGCCTTGGGGGGCCACATGAGGCGTCATAGAACTCTTGTGAATGCTTCTATGACAACTTCTATGAGGGGTGGAAATGTTGTTGGTAGCAATGAATTTCAAGAAGCGAAGAAACCCTTGAAGTTGGACTTGAATCTTCCAGCACTACCAGAGGATGATCATCATAGAGAATCCAAGTTTTCGTTTCAACAAAGAGAAAAAAACGTTATTGTCTTCTCTAAGTCTTCTTTGGTGGATTGCCATTACTGA 894 0.4362 MQVQEELLVVSKDHTQMMMIKGKRTKRQRAPSPLRLAMPYNSTSSNSSTNNSIDSATTSLPSPSPTNNTIEFREDQDMANCLILLAQGRYHVAAPTPHHNNNNNDDDNLKKSTSLYLYQCKTCNRCFPSFQALGGHRASHKKPKQNGTFSSEAVTNFIEENNDRYDPTTSTTLSLKTPNGVSNLCGTITATTTTTTTKANKVHECSICGAEFSSGQALGGHMRRHRTLVNASMTTSMRGGNVVGSNEFQEAKKPLKLDLNLPALPEDDHHRESKFSFQQREKNVIVFSKSSLVDCHY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0513 297 Gene3D Classic Zinc Finger 115 225 - -
Gso10g0513 297 SUPERFAMILY beta-beta-alpha zinc fingers 117 225 IPR036236 -
Gso10g0513 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Gso10g0513 297 SMART c2h2final6 118 140 IPR013087 -
Gso10g0513 297 SMART c2h2final6 203 225 IPR013087 -
Gso10g0513 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 225 IPR013087 -
Gso10g0513 297 Pfam C2H2-type zinc finger 202 226 - -
Gso10g0513 297 Pfam C2H2-type zinc finger 118 143 - -
Gso10g0513 297 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 14 296 - -
Gso10g0513 297 PANTHER ZINC FINGER PROTEIN ZAT5 14 296 - -
Gso10g0513 297 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Gso10g0513 297 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Gso10g0513 297 MobiDBLite consensus disorder prediction 37 70 - -
Gso10g0513 297 MobiDBLite consensus disorder prediction 21 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0513 Gso-Chr10 5644504 5645708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0513 10 297 C2H2 Transcription Factor Family AT2G28200 41.748 1.51e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0513 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0513 - - gmx:100785596 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1562 20 46259294 46261041 Gso10g0513 10 5644504 5645708 GST
Gso19g1545 19 44387077 44388396 Gso10g0513 10 5644504 5645708 PCT
Gso3g1568 3 41613824 41614942 Gso10g0513 10 5644504 5645708 PCT
Gso10g0513 10 5644504 5645708 Gso19g1545 19 44387077 44388396 PCT
Gso10g0513 10 5644504 5645708 Gso3g1568 3 41613824 41614942 PCT