Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0507 ATGCAAGGAGAACATTTGCGTAAAGGGACTTGGCTCCAAGAGGAAGATGAACAATTGACTAGCTTTGTGACCCGTCTTGGGGAGAGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGCCTCAAGAGAAGTGGTAAAAGCTGCAGGTTAAGATGGATGAACTATCTTCGTCCAAATCTCAAGCATGGTCATTTTAGTGTCGAAGAAGAGCAGCTTATTGTTCAGCTTCAACAACAATTGGGGAATAAGTGGGCAAAGATTGCTCGGAAACTTCCAGGTAGAACTGACAATGAAATCAAGAATTTCTGGAGAACTCATTTAAGAAATAGAGCTCAAGCTCAACAAGTCCCGGGAGATTTTAAGTACAAATTAGAAATTGCAACAGAAGAAGTCAACCAGAAAAGCATTGACATGGATTCCAAGGATTACAAACATGGAAACGTTTGCTGTCAAGATAGTGAGTGGGAGACAAAGGATGGTAGCTCCATAGACACTTTACCCTTATCAGATTGGGAATTGGGAAGCTCACCCTATGAAACTAGGATATTGGATTGGATAGCAGAATTGCAAAATGGATATGGTGATAAAGAACTAGAACAAGATTGTAATAGCACAGGAACGTGCAACAACTATAGTCCTCAAGAATTTGATGAGGGATGTGACTCATGGGATTATTCAGGTTCTTTGTGGGATATGAACTAA 699 0.4106 MQGEHLRKGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLKRSGKSCRLRWMNYLRPNLKHGHFSVEEEQLIVQLQQQLGNKWAKIARKLPGRTDNEIKNFWRTHLRNRAQAQQVPGDFKYKLEIATEEVNQKSIDMDSKDYKHGNVCCQDSEWETKDGSSIDTLPLSDWELGSSPYETRILDWIAELQNGYGDKELEQDCNSTGTCNNYSPQEFDEGCDSWDYSGSLWDMN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0507 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gso10g0507 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 232 - -
Gso10g0507 232 Gene3D - 63 107 - -
Gso10g0507 232 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gso10g0507 232 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gso10g0507 232 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Gso10g0507 232 CDD SANT 81 106 IPR001005 -
Gso10g0507 232 PANTHER MYB TRANSCRIPTION FACTOR 3 232 - -
Gso10g0507 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Gso10g0507 232 CDD SANT 10 55 IPR001005 -
Gso10g0507 232 Gene3D - 8 60 - -
Gso10g0507 232 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Gso10g0507 232 SMART sant 60 108 IPR001005 -
Gso10g0507 232 SMART sant 7 57 IPR001005 -
Gso10g0507 232 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0507 Gso-Chr10 5586142 5588190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0507 4 116 MYB Transcription Factor Family AT5G59780 59.292 3.60e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g0507 Myb_DNA-binding 9.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0507 K09422 - gmx:100783472 486.108