Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0503 ATGTCTACCTCCGCAGCTTCCCTCGCACTCCCAACCCTCACTCTCCGAACCCGACAACCTCTATGTTCTCCCCAATGCTTCTCCTCGTCCCTCTCCCTCACACCCAACAACAAACCCATTTCCATTTCTGCTGTTTTTCTCAAACCAACAACTCTGTCGTCGTCTCGCTTCGTTCCCCGCGTCGTGGTGTCGTCGGATTTGGGGCAGGAGGAGGACACCTTCAGTGACGGAGACGGCCCCAGCTTCTCCCCCGACCTTAAGCTCTTTGTCGGGAATCTTCCGTTCAACGTCGACAGCGCGCAGCTCGCGGAGCTCTTTGAGAGTGCCGGGAATGTGGAGGTGGTTGAGGTGATTTATGATAAGACTACTGGGAGGAGCAGGGGGTTTGGGTTTGTCACCATGTCTTCGGTTGAGGAAGCTGAAGCGGCTGCTCAGCAGTTCAATGGCTATGAACTTGATGGAAGAGCATTGAGAGTGAATTCTGGGCCACCTCCTGCTCGGAATGAGAGTGCTCCTCGTTTTAGAGGTGGTTCTTCTTTCGGTTCCAGAGGTGGTGGTCCTTCAGATAGTGAAAACCGTGTTCATGTAAGTAATCTTGCTTGGGGTGTTGACAATGTAGCACTTAAGTCATTGTTTCGTGAACAAGGGAATGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTTCAGTAGCCCTGATGAGGTCAACAGTGCAATTCAGTCCTTAAATGGCGTGGACTTGAATGGCAGAGCTATACGAGTCTCATTAGCAGATTCCAAGCCCAAGCAGTTCTGA 828 0.5121 MSTSAASLALPTLTLRTRQPLCSPQCFSSSLSLTPNNKPISISAVFLKPTTLSSSRFVPRVVVSSDLGQEEDTFSDGDGPSFSPDLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRVSLADSKPKQF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0503 275 Gene3D - 68 188 IPR012677 -
Gso10g0503 275 Gene3D - 189 274 IPR012677 -
Gso10g0503 275 MobiDBLite consensus disorder prediction 155 191 - -
Gso10g0503 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 264 IPR000504 GO:0003723
Gso10g0503 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Gso10g0503 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Gso10g0503 275 SMART rrm1_1 193 266 IPR000504 GO:0003723
Gso10g0503 275 SMART rrm1_1 87 160 IPR000504 GO:0003723
Gso10g0503 275 SUPERFAMILY RNA-binding domain, RBD 82 189 IPR035979 GO:0003676
Gso10g0503 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Gso10g0503 275 CDD RRM_HP0827_like 87 160 - -
Gso10g0503 275 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 275 - -
Gso10g0503 275 SUPERFAMILY RNA-binding domain, RBD 189 273 IPR035979 GO:0003676
Gso10g0503 275 PANTHER OS02G0815200 PROTEIN 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0503 Gso-Chr10 5526462 5528956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0503 170 272 Eukaryotic Initiation Factors Gene Family AT4G34110 33.010 3.78e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0503 - - gmx:100786275 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1466 19 43527908 43532371 Gso10g0503 10 5526462 5528956 PCT
Gso3g1480 3 40751223 40755514 Gso10g0503 10 5526462 5528956 PCT