Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso10g0503 | ATGTCTACCTCCGCAGCTTCCCTCGCACTCCCAACCCTCACTCTCCGAACCCGACAACCTCTATGTTCTCCCCAATGCTTCTCCTCGTCCCTCTCCCTCACACCCAACAACAAACCCATTTCCATTTCTGCTGTTTTTCTCAAACCAACAACTCTGTCGTCGTCTCGCTTCGTTCCCCGCGTCGTGGTGTCGTCGGATTTGGGGCAGGAGGAGGACACCTTCAGTGACGGAGACGGCCCCAGCTTCTCCCCCGACCTTAAGCTCTTTGTCGGGAATCTTCCGTTCAACGTCGACAGCGCGCAGCTCGCGGAGCTCTTTGAGAGTGCCGGGAATGTGGAGGTGGTTGAGGTGATTTATGATAAGACTACTGGGAGGAGCAGGGGGTTTGGGTTTGTCACCATGTCTTCGGTTGAGGAAGCTGAAGCGGCTGCTCAGCAGTTCAATGGCTATGAACTTGATGGAAGAGCATTGAGAGTGAATTCTGGGCCACCTCCTGCTCGGAATGAGAGTGCTCCTCGTTTTAGAGGTGGTTCTTCTTTCGGTTCCAGAGGTGGTGGTCCTTCAGATAGTGAAAACCGTGTTCATGTAAGTAATCTTGCTTGGGGTGTTGACAATGTAGCACTTAAGTCATTGTTTCGTGAACAAGGGAATGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTTCAGTAGCCCTGATGAGGTCAACAGTGCAATTCAGTCCTTAAATGGCGTGGACTTGAATGGCAGAGCTATACGAGTCTCATTAGCAGATTCCAAGCCCAAGCAGTTCTGA | 828 | 0.5121 | MSTSAASLALPTLTLRTRQPLCSPQCFSSSLSLTPNNKPISISAVFLKPTTLSSSRFVPRVVVSSDLGQEEDTFSDGDGPSFSPDLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRVSLADSKPKQF* | 276 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso10g0503 | 275 | Gene3D | - | 68 | 188 | IPR012677 | - | |
Gso10g0503 | 275 | Gene3D | - | 189 | 274 | IPR012677 | - | |
Gso10g0503 | 275 | MobiDBLite | consensus disorder prediction | 155 | 191 | - | - | |
Gso10g0503 | 275 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 195 | 264 | IPR000504 | GO:0003723 | |
Gso10g0503 | 275 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 88 | 158 | IPR000504 | GO:0003723 | |
Gso10g0503 | 275 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 192 | 270 | IPR000504 | GO:0003723 | |
Gso10g0503 | 275 | SMART | rrm1_1 | 193 | 266 | IPR000504 | GO:0003723 | |
Gso10g0503 | 275 | SMART | rrm1_1 | 87 | 160 | IPR000504 | GO:0003723 | |
Gso10g0503 | 275 | SUPERFAMILY | RNA-binding domain, RBD | 82 | 189 | IPR035979 | GO:0003676 | |
Gso10g0503 | 275 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 86 | 164 | IPR000504 | GO:0003723 | |
Gso10g0503 | 275 | CDD | RRM_HP0827_like | 87 | 160 | - | - | |
Gso10g0503 | 275 | PANTHER | 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC | 1 | 275 | - | - | |
Gso10g0503 | 275 | SUPERFAMILY | RNA-binding domain, RBD | 189 | 273 | IPR035979 | GO:0003676 | |
Gso10g0503 | 275 | PANTHER | OS02G0815200 PROTEIN | 1 | 275 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso10g0503 | Gso-Chr10 | 5526462 | 5528956 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso10g0503 | 170 | 272 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 33.010 | 3.78e-09 | 55.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso10g0503 | - | - | gmx:100786275 | 509.99 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso19g1466 | 19 | 43527908 | 43532371 | Gso10g0503 | 10 | 5526462 | 5528956 | PCT | |
Gso3g1480 | 3 | 40751223 | 40755514 | Gso10g0503 | 10 | 5526462 | 5528956 | PCT |