Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0501 ATGGCATCAGAAGCAAATGCTGCCAACACCAACTTCTGTGTAAATGTTAGCAACAATGGCTACATTAGTGCTAATGACCCCTTGAACTGGGGTGCGGCGGCGGAGGCTATGGCTGGGAGCCACCTCGACGAGGTCAAGCGCATGCTAGAGGAGTACCGGAGGCCCGTCGTCAAGCTCGGTGGAGAGACCCTGACCATCTCGCAGGTCGCGGCGATCGCGGCCCACGACCAGGGGGTGAAGGTGGAGCTGGCGGAGTCCTCCAGGGCCGGTGTTAAGGCCAGCAGTGACTGGGTGATGGAGAGCATGAACAAGGGCACTGACAGCTACGGCGTCACCACCGGGTTCGGTGCTACCTCCCACCGGAGAACCAAACAGGGCGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGCACCCTACCCCACACAGCAACCAGAGCAGCTATGCTAGTGAGAATCAACACACTCCTCCAAGGCTACTCAGGAATCAGGTTTGAAATTTTGGAGGCAATCACAAAGCTTCTGAACAACAACATTACCCCATGTTTGCCACTTAGGGGAACAATCACAGCATCTGGTGATCTTGTTCCTTTGTCCTACATTGCTGGTTTGCTAACTGGTAGACCAAACTCCAAGGCTGTTGGACCCTCTGGTGAGATTCTGAATGCCAAAGAAGCCTTTGAATTGGCCAACATCGGTGCTGAGTTCTTTGAGTTGCAACCTAAGGAAGGCCTTGCCCTTGTGAATGGCACTGCTGTTGGTTCTGGCTTGGCCTCAATTGTTCTATTTGAAGCCAACATCATTGCTGTCTTGTCTGAAGTTATTTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTCACTGACCATTTGACTCATAAACTAAAGCACCACCCTGGTCAGATTGAAGCTGCTGCTATTATGGAACACATTTTGGAAGGAAGCTCTTACGTGAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTACAAAAGCCTAAACAGGACCGTTATGCTCTTAGGACTTCACCACAATGGCTTGGTCCTCTAATTGAAGTGATTAGATTCTCTACCAAGTCAATTGAGAGGGAGATTAACTCAGTCAATGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCACTTCATGGTGGTAACTTCCAAGGAACTCCTATTGGAGTCTCCATGGATAATACACGTTTGGCTCTTGCTTCAATTGGTAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTATTACAACAATGGTTTGCCTTCAAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGATTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGTTCTGAACTTCAATATTTGGCGAATCCGGTGACAAGCCACGTGCAAAGCGCGGAGCAACACAACCAAGATGTGAACTCTCTGGGGCTGATTTCATCAAGGAAGACTCATGAGGCTATTGAGATCCTCAAGCTCATGTCCTCCACTTTCCTGGTCGCCCTTTGCCAAGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACGGTCAAGAACGTTGTGAGTCAAGTTGCTAAGAGGACTCTCACCACAGGTGTCAATGGAGAGCTTCACCCTTCAAGGTTTTGTGAGAAGGACTTGCTCAAGGTTGTTGATAGGGAGTACACATTTGCATACATTGATGACCCCTGCAGTGGAACATACCCTTTGATGCAAAAGCTAAGGCAAGTGCTTGTGGACTATGCATTGGCCAATGGAGAGAACGAGAAGAACACAAACACATCAATCTTCCAAAAGATTGCAACATTTGAGGAAGAGTTGAAGACCCTTTTGCCTAAGGAAGTGGAAGGTGCAAGAGTTGCATATGAGAATGACCAATGTGCAATTCCAAACAAGATCAAGGAATGCAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTGGGGACAGCATTGCTAACTGGTGAAAGGGTTATCTCACCGGGTGAAGAGTGTGACAAAGTGTTCACTGCTTTGTGCCAAGGGAAGATCATTGATCCACTTTTGGAATGCCTTGGGGAGTGGAATGGGGCACCTCTTCCAATATGTTAG 2154 0.474 MASEANAANTNFCVNVSNNGYISANDPLNWGAAAEAMAGSHLDEVKRMLEEYRRPVVKLGGETLTISQVAAIAAHDQGVKVELAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGAEFFELQPKEGLALVNGTAVGSGLASIVLFEANIIAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGENEKNTNTSIFQKIATFEEELKTLLPKEVEGARVAYENDQCAIPNKIKECRSYPLYKFVREELGTALLTGERVISPGEECDKVFTALCQGKIIDPLLECLGEWNGAPLPIC* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0501 717 CDD PAL-HAL 62 527 IPR001106 -
Gso10g0501 717 Gene3D - 17 263 IPR024083 -
Gso10g0501 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Gso10g0501 717 Pfam Aromatic amino acid lyase 64 544 IPR001106 -
Gso10g0501 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Gso10g0501 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gso10g0501 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
Gso10g0501 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 15 717 - -
Gso10g0501 717 Gene3D - 530 651 IPR023144 -
Gso10g0501 717 PANTHER HISTIDINE AMMONIA-LYASE 15 717 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0501 Gso-Chr10 5452817 5457282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0501 17 717 Monolignol Biosynthesis Gene Families AT2G37040 83.024 0.0 1237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0501 K10775 - gmx:100302735 1415.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1530 3 41205600 41209460 Gso10g0501 10 5452817 5457282 PCT