Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0497 ATGGATCGGGAAGAATATTTGGGGAAGTGTTCCAATATGAAATGCCAAAGAGTGGATGAATCATATGTACATGCTCTTCAAGATGAAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAATGATCATGCTTCCCTGGATGGTAGTTTGGATTCTCATACAACTTTGAATGGAAAGGATGATTTGGAACTGGAGGCCCTTGATGGATTGCTGGATGATGTTGAAATCAATGATCTTGAAGGAACTGTTGGTTTCCCTGGTGGTACATGTGAAGAATATTTTTTGGATTTTGGATTTGCTGACAAATTTGAGGAGGTACTAGGCTCTGGTCCTTTTGTAGGTTCACTCTTGCAAAACTCAAGTTCTGAAAGTCATTCTTCCGGATTAAGCGGAAGTAGCATTGTTGATGGGGTATTAGAATCAACAGAAGTACCTATTGCACAATCTGAATGCAAAAATGATTCTCTAGATGAGACAATAACCTATGAATCACATGGTGCCTTCAGGAACAATCCAAGTCAACCATCAAAAGTAAATTGCAGATACAACATTTCACTTGATATACAACATCTGCAAGATTTGGATAACAACCGTCATTTAGCTGGTGGTATATTGACTTGTAAGAAGGAAAAGGGTCCTGTTGAAAAAGGCCAACCTGCTGCACTTAGAGAGAAGAGATTCCGAAAGCCTACTCAGAGGTACATTGAAGAATTTTCAAATTCAAGGTCAAAGGAAAAGGCACCAACTGCTGGTACAAAAACTAAATATTTAAGTGACTCATCATGTGATGATGTACTTCATATAAGAATTAAAGCATTCAAAAAGAGTCCAAGTGAAAAGTCTAGTATTGAAAATAGAGATGTGATGCTTCCTGAGTTGCAAGTTCACAAAGGGCGTCCGAAGAAAGAGAAACTTGAGTATGACATCGAGTCATTTCCCTTGGAATCTGAGGATGAATGGTTGACATCAAAAAGATCTAGAAGGAAAGATCGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTTGGTCGATGGACTGACATAAAGAGGTTTCTGTTTTCTTCTACAAGCTACCGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGCACAGAAAAGCACGAGAGAGGCTGAACAAAATGACGAGCTTGCCCTGCGTCCCTTGCCATTTAATGTGGTACATCGTGTGCAAGAATTGGCTAAAATTCACCCATACCCTAGGGAACGTGGATCAAAGAAGTTGCGTGTTAGCCAAGCTGGCTCTTCTGTCATTGCTAAAGATTCTCCTCCCCTTAGTCTTAGCAAAAGAAATGTACGTAGGAAGTTTACTTAG 1395 0.4029 MDREEYLGKCSNMKCQRVDESYVHALQDEVMEVEHLLAEPRNDHASLDGSLDSHTTLNGKDDLELEALDGLLDDVEINDLEGTVGFPGGTCEEYFLDFGFADKFEEVLGSGPFVGSLLQNSSSESHSSGLSGSSIVDGVLESTEVPIAQSECKNDSLDETITYESHGAFRNNPSQPSKVNCRYNISLDIQHLQDLDNNRHLAGGILTCKKEKGPVEKGQPAALREKRFRKPTQRYIEEFSNSRSKEKAPTAGTKTKYLSDSSCDDVLHIRIKAFKKSPSEKSSIENRDVMLPELQVHKGRPKKEKLEYDIESFPLESEDEWLTSKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKRFLFSSTSYRTPIDLRDKWRNLLRASSAQKSTREAEQNDELALRPLPFNVVHRVQELAKIHPYPRERGSKKLRVSQAGSSVIAKDSPPLSLSKRNVRRKFT* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0497 464 CDD SANT_TRF 337 387 - -
Gso10g0497 464 SUPERFAMILY Homeodomain-like 338 406 IPR009057 -
Gso10g0497 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 330 390 IPR017930 -
Gso10g0497 464 PANTHER TRF-LIKE 8 8 462 - -
Gso10g0497 464 Pfam Myb-like DNA-binding domain 338 386 IPR001005 -
Gso10g0497 464 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 462 - -
Gso10g0497 464 MobiDBLite consensus disorder prediction 431 464 - -
Gso10g0497 464 SMART sant 335 388 IPR001005 -
Gso10g0497 464 Gene3D - 324 436 - -
Gso10g0497 464 ProSiteProfiles Myb-like domain profile. 331 386 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0497 Gso-Chr10 5420511 5426501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0497 337 386 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 2.32e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso10g0497 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0497 - - gmx:100777720 893.264