Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0491 ATGGCCAACCAACCTGAGTCTTCCTCCTCCGATGCTAAGGGTACGAAAAGAGACTTCAGCACCGCGATCCTTGAGCGCAAGAAGGCGCCGAACCGGCTCGTTGTTGATGAGGCTGTAAACGATGACAACTCCGTCGTCGCACTTCATCCCAACACCATGGAGAAGCTCCAGCTCTTCCGTGGTGATACTATTCTGCTCAAGGGGAAGAAGAGAAAAGATACTATTTGTATTGCGCTTGCCGATGAGACGTGCGAGGAGCCGAAGATACGGATGAACAAGGTTGTGAGGAACAACCTTAGGGTTAGGCTTGGAGACGTTGTTTCCGTTCACCAGTGCGCTGATGTAAAGTACGGAAAGCGTGTGCACATTCTTCCCGTGGATGATACCATTGAAGGGGTTACTGGGAATCTCTTCGATGCGTACTTGAAACCTTATTTCCTTGAGGCATATAGGCCAGTGAGGAAGGGTGATATGTTCCTTGTGAGAGGGGGGATGAGAAGTGTGGAGTTCAAGGTTATTGAAACTGATCCTGCTGAGTACTGTGTTGTTGCTCCTGACACTGAGATCTTCTGTGAGGGAGAGCCTGTTAAAAGGGAAGATGAGAATCGATTAGATGAGGTTGGTTATGATGATGTTGGTGGTGTTAGAAAGCAGATGGCGCAGATTCGGGAACTGGTGGAACTGCCATTGAGGCATCCACAATTGTTCAAATCTATTGGTGTTAAGCCACCAAAAGGAATTCTTCTATATGGACCACCTGGGTCTGGTAAGACTTTAATTGCTCGGGCTGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATTAATGGCCCTGAGATCATGTCAAAATTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCTGAGAAGAATGCACCCTCTATTATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGCGTGAAAAGACTCATGGGGAGGTTGAGAGGAGAATTGTTTCCCAACTCTTGACCCTCATGGATGGGCTTAAATCCCGTGCACATGTAATTGTTATTGGAGCCACGAATCGTCCCAATAGCATTGACCCTGCTCTTAGGAGATTTGGAAGATTTGATCGGGAGATTGATATTGGTGTACCAGATGAAGTTGGGCGTCTAGAGGTTCTTCGTATCCATACAAAAAATATGAAGCTTGCTGATGATGTTGATTTAGAAAGGATTGCTAAGGATACTCATGGATATGTTGGTGCTGATTTGGCTGCTTTGTGTACTGAAGCTGCTCTTCAGTGCATCAGAGAGAAAATGGATGTCATTGACTTGGAAGATGAGACCATTGATGCTGAGATACTGAACTCAATGGCAGTGACAAATGAGCATTTCCAGACTGCTCTTGGGACAAGCAATCCTTCTGCTCTCCGAGAAACAGTTGTTGAAGTGCCTAATGTCAGTTGGGAAGACATTGGTGGTCTTGAAAATGTGAAGAGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCGGAAAAATTTGAGAAGTTTGGAATGTCACCTTCCAAGGGGGTTCTTTTCTATGGTCCCCCTGGTTGTGGTAAAACCCTTTTGGCAAAAGCTATTGCCAATGAATGTCAGGCAAATTTCATCAGTGTCAAAGGTCCTGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCAAATGTGAGGGAGATTTTTGACAAAGCTCGTGGTTCTGCTCCATGTGTCCTTTTCTTTGACGAACTCGACTCTATTGCAACTCAGAGAGGCAGCAGTGTAGGAGATGCTGGTGGTGCTGCTGACAGGGTGTTGAACCAATTGCTTACAGAGATGGATGGCATGTCAGCAAAGAAAACTGTGTTCATCATTGGGGCCACTAATCGACCAGACATTATAGATCCTGCACTTCTGCGACCAGGTCGTCTGGACCAATTGATTTATATCCCACTTCCAGATGAGGATTCCCGCCATCAGATATTTAAAGCTTGCTTGAGAAAATCTCCCGTTTCAAAAGATGTTGACCTTAGAGCTCTTGCCAAGTATACTCAAGGCTTCAGTGGTGCAGATATTACTGAAATTTGCCAACGTGCATGCAAGTATGCTATAAGAGAGAACATTGAGAAGGACATTGAGAGAGAAAGGAGGAAAAGAGAAAACCCTGAGGCCATGGAAGAGGATATTGAAGAGGAAGAGGTAGCTGAAATCAAAGCAGCTCATTTTGAAGAATCAATGAAGTATGCACGAAGGAGTGTAAGTGATGCTGACATTCGCAAGTACCAGGCTTTTGCACAAACATTGCAGCAGTCGAGAGGGTTTGGATCTGACTTCACTTTTGCAAATACCAGCTCTGTTGGTGCTGCTGCTGGTGCCGGGGCTGCATCCGACCCTTTTGCAAGTGCTGGTGGAGCCGATGAAGATGATCTTTACAGTTAG 2442 0.4558 MANQPESSSSDAKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPNTMEKLQLFRGDTILLKGKKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDMFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLADDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRKRENPEAMEEDIEEEEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSDFTFANTSSVGAAAGAGAASDPFASAGGADEDDLYS* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0491 813 CDD AAA 486 653 - -
Gso10g0491 813 SMART AAA_5 243 379 IPR003593 -
Gso10g0491 813 SMART AAA_5 516 655 IPR003593 -
Gso10g0491 813 ProSitePatterns AAA-protein family signature. 623 641 IPR003960 GO:0005524|GO:0016887
Gso10g0491 813 SUPERFAMILY ADC-like 29 112 IPR009010 -
Gso10g0491 813 SMART CDC48_2_2 132 198 IPR004201 -
Gso10g0491 813 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 33 770 IPR005938 GO:0016787
Gso10g0491 813 Gene3D - 657 766 - -
Gso10g0491 813 Pfam Vps4 C terminal oligomerisation domain 728 767 IPR015415 -
Gso10g0491 813 Pfam ATPase family associated with various cellular activities (AAA) 520 653 IPR003959 GO:0005524|GO:0016887
Gso10g0491 813 Pfam ATPase family associated with various cellular activities (AAA) 247 376 IPR003959 GO:0005524|GO:0016887
Gso10g0491 813 SMART CDC48_N_2 32 115 IPR003338 -
Gso10g0491 813 Pfam Cell division protein 48 (CDC48), domain 2 134 197 IPR004201 -
Gso10g0491 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 468 IPR027417 -
Gso10g0491 813 Pfam AAA+ lid domain 675 715 IPR041569 -
Gso10g0491 813 Pfam AAA+ lid domain 399 441 IPR041569 -
Gso10g0491 813 Pfam Cell division protein 48 (CDC48), N-terminal domain 32 113 IPR003338 -
Gso10g0491 813 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 7 784 - -
Gso10g0491 813 Gene3D - 212 376 IPR027417 -
Gso10g0491 813 Gene3D - 378 469 - -
Gso10g0491 813 CDD AAA 213 376 - -
Gso10g0491 813 MobiDBLite consensus disorder prediction 790 813 - -
Gso10g0491 813 Gene3D - 470 653 IPR027417 -
Gso10g0491 813 Gene3D - 115 211 - -
Gso10g0491 813 Gene3D - 9 114 - -
Gso10g0491 813 PANTHER AAA-FAMILY ATPASE 7 784 - -
Gso10g0491 813 SUPERFAMILY Cdc48 domain 2-like 114 206 IPR029067 -
Gso10g0491 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 767 IPR027417 -
Gso10g0491 813 ProSitePatterns AAA-protein family signature. 347 365 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0491 Gso-Chr10 5329608 5334249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0491 449 740 Calmodulin-binding Proteins AT3G56690 46.233 1.39e-80 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0491 K13525 - gmx:100806067 1547.72