Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0459 ATGATTACATTCATGGACACAAAGGAGAAATCAAAAGAGGTGGAGAGTTGTTTGGATCCTCAGCTATGGCATGCATGTGCAGGTGGTATTGTACAAATGCCAGCAGTGAACTCTAAGGTTTATTACTTCCCTCAGGGTCATGCTGAGCATGCATGTGGACCAGTTAACTTCAGGACTTGTCCTAAGGTTCCACCTTTTGTTCCATGTAGAGTGACTGCTGTCAAATACAGGGCTGATCCTGAGACCGATGAAGTCTATGCCAAACTCAAGCTCATTCCTCTGAATGCCAATGATGTTGATTATGATCGTGATGTTGTTGGTGGGGCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGGGGATTTTCTGTTCCTAGGTATTGTGCAGAGACAATTTTCCCTCGTTTGGACTACTCAGTTGACCCTCCCGTTCAAAACATCCTTGCCAAGGATGTTCATGGGGAAACATGGAAATTCAGACACATTTATAGGGGCACGCCAAGGCGACATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGGGCAGAAAATGGGGATTTGTGTGTTGGGATTCGACGAGCGAAGAAGGGAATTTGTGGTGGACTTGAGACTTCCTCAGGGTGGAATCCTGCAGGAGGAAATTGTCATATTCCTTATGGTGGATTTTCGCCCTTTTTTAGGGAGGATGATAATAGAATCTCGAGAAATGGCAATAGCAATGGGTTAAACCCTAGTGTGAGTATGATGGGAAAGGGAAAAGTCAGGCCAGAAGCAGTTTCTGAAGCTTCAAATCTTGCAGCCAATAAGAAACCCTTCGAGGTTGTTTACTACCCTCGAGCAAGTACTCCCGAGTTTTGTGTAAAGGCCTCCCTAGTTGAAGCAGCACTACAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACAGAAGACTCCTCACGGATAAGTTGGTTTATGGGAACTATATCTTCGGCTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCGGATTTACTTCAAAACGTGAGAAGGGTGAGCCCGTGGCTGGTTGAATTGGTGTCAAACATGCCTGCCATTCATTTTTCCCCTTTCTCACCACCACGGAAGAAATTGAGATTGCCTCAACAACCAGATTTCCCCCTTGATGGCCAGATTCCTTTGTCGACATTTCCCAGCAACCTTCTAGGTCCTAGTAACACCAACCAATTTGGTTGTCTACTTGAAAGTACACCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTCCACCTCAGTAAATTGCAGTCAGGTCTATTTTCGACTGGTTTCCCGTCTCTTGATCACGCTGCTACGCCAATGAGGGTCTCAAATAGCATAACATTACAAAAGCCCAACCTTAGTGAGAACGTCTCTTGCTTACTGAGTATGGCAAATTCTACCCAGTCTTCAAAGAAATTGGATGTTGGGAAGACACCTTCGCTCGTGCTTTTTGGCCAAAAAATTCTCACTGAGCAGCAGATCTCTCCAAGTAGCTCTGGTGATACACTCTCCCCAGTTCTTACCAGAAATTGTTCATCAGATGGAAATGTCGATAAAGTGACTAATTTTTCTGATGGTTCTGGATCAGCTCTTCATCAGGAAGGTTTACGCGAACACTCCTCTTGTGAGAGGTTCCAATGGTGTAAGGATAACCACCAAGAAACTGAGGCTGGTTTGGAGATTGGTCACTGTAAAATTTTTATGGAGTCTGAAGATGTGGGTCGGACTATGGACCTCTCGTTGCTTCGGTCTTATGATGAATTACATAGAAAGTTGGCAGACATGTTTGGCATAGAAAAATCTGAAATGTTAAGTCACGTGCTCTATCGTGATTCAACTGGGGCTGTCAAACGCATTAGTGATGAATCATTCAGTGACTTCACAAGAACAGCCAAAAGGTTGACTATTCTAATGGATTCTGGCAGTAACAACGTAGGAGTGTAG 2103 0.4479 MITFMDTKEKSKEVESCLDPQLWHACAGGIVQMPAVNSKVYYFPQGHAEHACGPVNFRTCPKVPPFVPCRVTAVKYRADPETDEVYAKLKLIPLNANDVDYDRDVVGGAETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVDPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGICGGLETSSGWNPAGGNCHIPYGGFSPFFREDDNRISRNGNSNGLNPSVSMMGKGKVRPEAVSEASNLAANKKPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSAQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHFSPFSPPRKKLRLPQQPDFPLDGQIPLSTFPSNLLGPSNTNQFGCLLESTPAGMQGARHAHYGLSLSDLHLSKLQSGLFSTGFPSLDHAATPMRVSNSITLQKPNLSENVSCLLSMANSTQSSKKLDVGKTPSLVLFGQKILTEQQISPSSSGDTLSPVLTRNCSSDGNVDKVTNFSDGSGSALHQEGLREHSSCERFQWCKDNHQETEAGLEIGHCKIFMESEDVGRTMDLSLLRSYDELHRKLADMFGIEKSEMLSHVLYRDSTGAVKRISDESFSDFTRTAKRLTILMDSGSNNVGV* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0459 700 Gene3D - 116 220 IPR015300 -
Gso10g0459 700 CDD B3_DNA 117 218 IPR003340 GO:0003677
Gso10g0459 700 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Gso10g0459 700 Gene3D - 613 698 - -
Gso10g0459 700 Gene3D - 324 398 - -
Gso10g0459 700 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso10g0459 700 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Gso10g0459 700 ProSiteProfiles PB1 domain profile. 614 694 IPR000270 GO:0005515
Gso10g0459 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso10g0459 700 PANTHER AUXIN RESPONSE FACTOR 6 691 - -
Gso10g0459 700 SMART B3_2 118 220 IPR003340 GO:0003677
Gso10g0459 700 SUPERFAMILY DNA-binding pseudobarrel domain 112 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0459 Gso-Chr10 4967617 4972884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0459 1 700 B3 DNA Binding Superfamily AT4G30080 56.039 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso10g0459 B3 7.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0459 - - gmx:100796522 1436.01