Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0452 ATGAAGATTCCTTGTTTCTCTTGTTTCTCGCCATCGACCACTGAAAAAAACAACAACAACGATTACCCAGATGAAGAGATCAACGATGGGAGCTTTCGTTTATTCACTCACAAGCAATTGAAATTAGCCACGCGCAATTTTCATTCCTCGGAGAAGGTTGGAGAAGGTGGCTTTGGATCTGTCTTTAAGGGGAAGCTTGTGGATGGATCTTTTGTGGCGGTGAAAGTGCTTTCGGTTGAGGTGGAATCCATGCGTGGAGAGAGGGAATTTGTGGCGGAATTGGCCACACTTGCAAACATCAAGCACCAAAATCTTGTAAGCCTAAAAGGGTGTTGTGTGGAAGGTGCTTATAGATATTTGGTCTATGATTATATGGAGAACAATAGCCTCTACAACACTTTCTTAGGTTCGGAAGAGAGAAGGATGAGATTCAATTGGGAAATAAGGAAGGACGTATCCATAGGTGTGGCTCGGGGGCTTGACTTTCTCCATGAGGAGCTTAAGCCTCATATCGTACATAGAGACATCAAAGCCAAAAACATACTTCTTGATAGAAATTTCATACCAAAGGTTTCAGATTTTGGTCTGGCAAAATTGCTGAGAGACGAAACATCTTACATCAGCACTCGGGTAGCAGGGACATTGGGTTATCTAGCTCCAGAATATGCAAATTCCGGCCAGGTTTCGCGAAAATCAGATGTTTATAGCTTCGGAGTGTTGCTTTTACAAATTGTGAGTGGCCTAGCAGTGGTGGATGCCTATCAAGACATTGAACGTTTCATAGTGGAGAAGGCGTGGGCAGCGTATCAATCTAATGATCTATTAAAATTGGTGGATCCCATGCTTAATATGAATTTTCCAGAGGAAGAGGCATTGAAATTCCTCAAGGTGGGGCTGCTTTGCGTGCAAGAAACTGCCAAGCTTAGGCCACGAATGTCAGAAGTTGTAGAGAAGTTGACCAAGGACATTGATATGAGAGATGTTCACATTTCGAAGCCAGGGTTCGTTGCTGATCTCAGGAACATCAGAATCAAACAACAAAACCTAAACTCGTCCGAGGAATCAAGTTCTGCTGGAGCAACCTTTACAAGCTCCATTTCGAGTTCGGCCAATCTTGCTCGTTATTTATTAGATTGA 1137 0.4318 MKIPCFSCFSPSTTEKNNNNDYPDEEINDGSFRLFTHKQLKLATRNFHSSEKVGEGGFGSVFKGKLVDGSFVAVKVLSVEVESMRGEREFVAELATLANIKHQNLVSLKGCCVEGAYRYLVYDYMENNSLYNTFLGSEERRMRFNWEIRKDVSIGVARGLDFLHEELKPHIVHRDIKAKNILLDRNFIPKVSDFGLAKLLRDETSYISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDIERFIVEKAWAAYQSNDLLKLVDPMLNMNFPEEEALKFLKVGLLCVQETAKLRPRMSEVVEKLTKDIDMRDVHISKPGFVADLRNIRIKQQNLNSSEESSSAGATFTSSISSSANLARYLLD* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0452 378 ProSiteProfiles Protein kinase domain profile. 47 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0452 378 Gene3D Phosphorylase Kinase; domain 1 9 124 - -
Gso10g0452 378 PANTHER RECEPTOR-LIKE KINASE 5 351 - -
Gso10g0452 378 Pfam Protein tyrosine and serine/threonine kinase 49 319 IPR001245 GO:0004672|GO:0006468
Gso10g0452 378 CDD STKc_IRAK 53 321 - -
Gso10g0452 378 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gso10g0452 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Gso10g0452 378 SMART serkin_6 47 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0452 378 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 351 - -
Gso10g0452 378 Gene3D Transferase(Phosphotransferase) domain 1 125 332 - -
Gso10g0452 378 SUPERFAMILY Protein kinase-like (PK-like) 19 319 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0452 Gso-Chr10 4861544 4864066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0452 35 370 Receptor kinase-like Gene Family AT1G53430 45.906 7.81e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso10g0452 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0452 - - gmx:100813945 733.791