Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0451 ATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGCTGGAGACACGGCGGAGGCGGTGGCAGCGGGAGGCGGATTCACCCGCCGCCTCCGCCGGTGATGTCGCCGCCGGAGGTAACGGCGAACCGATTCGTGTACCCTCCGGCCGCCACGCCGTATCACAACTACCCCGGGTACTACCCGCCGCCGACCACCATGCCGGCGCCGTTGCCGGCGCCATACGACCACCACCACCGTCCGGCGGTGGACCCGATGTGGGTGAGGTATCCGCCGGCGGCACCGCCGGCACCGGCGCCGTACGTGGAGCACCAGAAGGCGGTTACGATTAAGAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCTGTTTTCTCGTGTCGTTTACGTTTGATGCCACCGTTTCGGGAAGCATCACCATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACCCTAACCCCAATGAAGGAAAATGTTCTTCCACCTGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCTGGAACCGGTATTGATTTTTCAACATTTGAGGAGTCTGAGTTATTGAAAGCAGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGACGCATCCTCCGGCGACCATGATGAATCAAAATCAAATGAAACTCCTGCATCCGGTAGCTCAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCAGGTGAAGGTTGTTAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTTCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCGGGAAAAGAGTGTGTTATATGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGTTGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTCGAGAGGCTTTTGGAGATCAAAGTTGGACCCGAGCTTGAGGAGTGA 1050 0.5286 MGNIGSSGSNSRWRHGGGGGSGRRIHPPPPPVMSPPEVTANRFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRPAVDPMWVRYPPAAPPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGCFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSTFEESELLKAGDMDVYPVAIKADASSGDHDESKSNETPASGSSNSQITQAVFEKEKGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPELEE* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0451 349 SUPERFAMILY RING/U-box 292 337 - -
Gso10g0451 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 349 - -
Gso10g0451 349 SMART ring_2 293 331 IPR001841 -
Gso10g0451 349 MobiDBLite consensus disorder prediction 217 239 - -
Gso10g0451 349 PANTHER MAHOGUNIN 1 349 IPR045194 GO:0061630
Gso10g0451 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Gso10g0451 349 MobiDBLite consensus disorder prediction 1 38 - -
Gso10g0451 349 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Gso10g0451 349 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
Gso10g0451 349 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 292 332 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0451 Gso-Chr10 4797831 4802288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0451 87 312 C3H Transcription Factor Family AT3G09770 67.521 4.37e-105 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0451 - - gmx:100783831 631.328