Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0448 ATGGCAACTGAAGCTGCAGGATCTTCCAAGGACAACATTAACCAAGGCCATGGCACTACTGAAAATAGGGCTGATACCCCAATTCAAAAGGGTCCAGCATCATCTGAAATAACCGAGGAATTCCCAAGAGAACAACATGGGACAAGGCAAAACCTTATCTTGGATATTCCTGCAATATCTCAGGAGGAAGCAAGAAAAGATTATGCGAGGATAAACATGCCTCTAACTTCTCCTCCAAGAAGACTGATTTTTCCTCCCGGTCTAAGTCCTGTTTTCCCAAGAAGCAAAAAATACCCAGGGTCTGTACATGGAGGGAACTTGGCTTTTGCAGAAACAGCTAAGAAAGAACTGAATTTTCCAATTCGTCGGTCCCGTTCAGCACCTATGCTTAACAAAGAAGGTAACTCGCCTGTACGTGGCATGTTTCGTATAGTTCCGACCACACTACGATTAGATGAGAAAATTGCCACAACACCACCTATGACATCTCCAATTCATGATACTGTTAAAAATGAGGATGTTGGTGAAGATATTCCTGAAGAAGAAGCTGTCTGTAGAATTTGTATGGTTGAACTTGGAGAAGGTGGTAATACTTTCAAATTGGAGTGTGGCTGCAAAGGTGACCTTTCATTGGCACACAGAGGATGTGCAGTCAAATGGTTTACCATTAAAGGTAATAGAACATGCGATGTGTGCAAGCAAGAAGTTCAGAATCTAACTGTCACTCTTTTACGAGTTCAAAATGGTCTGGCACAAAATGGTCTGGCACAAAATGGTCTGGCACATAACATGCTAGGGGCTGATGCTTCTCGATACAGGTTTTGGCCGGATTTTGCCATTCTTGTTGTTATCAACATGCTGGCTTACTTTTGGTTTCATGTGTCTAATATGGGATCTGGTACTATAGTCCATTGTCTCGCATTTTCATGTGTATTGGGTTCTCTTGCAAGCTTTACAGCTACAGTAATGGTGAGGAGAAATCATGTATGGATTTATGCAACTGTTCAGTTTTGTCTAGTGTTTCTCATTGAACATCTTTTCTTCTCACTGTTTCATAGGTCAAATATCGATGCTGTTACATGTACTGGGATGGCAGTTGTAATGTGTGGAAATTTTATTCTTACGGAGATTTTGAAGTGGAGGGGAAGATCACTGGCTCAGTCGAATCAACAACAAGGTTCCCAAGAAGCAGTACCGCCACCTGATCAATCATCTACAATCCCTCATCAAGCTCAGATTGGTTCTGAACAAACTGAAAGTAATTTGGGAGAGTCTCATGCACAGAGGAGTTGA 1293 0.4192 MATEAAGSSKDNINQGHGTTENRADTPIQKGPASSEITEEFPREQHGTRQNLILDIPAISQEEARKDYARINMPLTSPPRRLIFPPGLSPVFPRSKKYPGSVHGGNLAFAETAKKELNFPIRRSRSAPMLNKEGNSPVRGMFRIVPTTLRLDEKIATTPPMTSPIHDTVKNEDVGEDIPEEEAVCRICMVELGEGGNTFKLECGCKGDLSLAHRGCAVKWFTIKGNRTCDVCKQEVQNLTVTLLRVQNGLAQNGLAQNGLAHNMLGADASRYRFWPDFAILVVINMLAYFWFHVSNMGSGTIVHCLAFSCVLGSLASFTATVMVRRNHVWIYATVQFCLVFLIEHLFFSLFHRSNIDAVTCTGMAVVMCGNFILTEILKWRGRSLAQSNQQQGSQEAVPPPDQSSTIPHQAQIGSEQTESNLGESHAQRS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0448 430 MobiDBLite consensus disorder prediction 388 430 - -
Gso10g0448 430 MobiDBLite consensus disorder prediction 1 51 - -
Gso10g0448 430 Pfam RING-variant domain 185 232 IPR011016 GO:0008270
Gso10g0448 430 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 4 96 - -
Gso10g0448 430 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 90 427 - -
Gso10g0448 430 SUPERFAMILY RING/U-box 181 236 - -
Gso10g0448 430 CDD RING_CH-C4HC3_MARCH 185 233 - -
Gso10g0448 430 ProSiteProfiles Zinc finger RING-CH-type profile. 177 239 IPR011016 GO:0008270
Gso10g0448 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 242 IPR013083 -
Gso10g0448 430 MobiDBLite consensus disorder prediction 1 33 - -
Gso10g0448 430 PANTHER OS02G0165000 PROTEIN 90 427 - -
Gso10g0448 430 PANTHER OS02G0165000 PROTEIN 4 96 - -
Gso10g0448 430 SMART ringv_2 184 233 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0448 Gso-Chr10 4776858 4784725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0448 119 296 C3H Transcription Factor Family AT2G37950 26.064 4.15e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0448 - - gsj:114369638 864.374