Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0446 ATGCAAATGATGCCCGGTGACCCCTTTTCCTTATCCACTTCCATCGGAGGCTTCACTCAAGATCAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCTCCCAAGAAGAAGAGAAACCTTCCGGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTATCCCCGAAGACCCTCATGGCCACAAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCATCGAAGGGGTCACAACCTTCCGTGGAAGCTAAGACAAAGGTCCAACAAAGAGGTGAGAAAGAAGGTTTATATCTGCCCTGAACAAACCTGCGTCCACCACGACCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCATTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCTCACACCAAAACCTGTGGAACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGATAGCTTCATTACTCATAGAGCGTTTTGCGATGCATTGGCTGAAGAGAGTGCGAGGCTCACAGCAGTTACAACAACAACTCTAAATTTCAAGAGTGAAGAGGGTGCTAATAATGTGATGAACTCGCAGCAGCATGGTTTGGGAGGACATGGACTAATTGGAGCACAACAAAGTCTTCAAAATGTTTCTGGCATTCCAAAATTCGGACCACATAGTTTTCGTTTGGATTTCAATGGAATGGAACAACAGCAAAGGCCAAGTTTATCACTATGGTTGAACCAGGGGAATCCCCAGATGAATCATAATAATAATAACATTAATAGCAGCAATAGTACTTCCAATGTGGGACCCAATTACATGTCAGCATGCTCTTCTTCAGGTTTGCCTGAGATTGTGCAAATGGCTCAGGCTAATGCTATGATGGGTTCTTCATCGATGGTGTCCAATTTTGGAGTTCATCATGCGGGTTCTAATAATTCAAGCAGTGCAAATCTTTCACTAGGGAAAAGAGGGGAAGCAGGTGGAAGTACTGTAGTGGACATGGCTTCTATTTATAACAACTCTGAGGGTCAAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCAACTGCGCTTCTTCAGAAAGCAGCGCAAATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTGATTAACTCACCTTCCTCCCAAACTACCAGTCTCAATAATAACAACAACAATGGTGATGCAGCCATGATGCTGGGAAGTAACACTACTACTACTACTACTGTTGCTGCAAATGCAAATGATCACTTTAGCTCATTGACGCATTCATCAAACAGTTTTGACCAACTTGTGATGCAAGTCAATGGGCAGTTGCAAAGTGAGCCAGTGAAGTTGAAGCTTCATTCTAATGCTGTGGAGAACAATTTGACAAGGGATTTTCTCGGTGTGAGTGGTGGAGGAGGTGGTGGTGGACCTCAGTACCTTTCCCAAGAGCTTGCAAAGTTTGCTTCCATAAATTCACCAATGGGGTTGATCCAATTCACTAGCAACCAATGA 1599 0.4484 MQMMPGDPFSLSTSIGGFTQDQQNTNPNPKPNAPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTAVTTTTLNFKSEEGANNVMNSQQHGLGGHGLIGAQQSLQNVSGIPKFGPHSFRLDFNGMEQQQRPSLSLWLNQGNPQMNHNNNNINSSNSTSNVGPNYMSACSSSGLPEIVQMAQANAMMGSSSMVSNFGVHHAGSNNSSSANLSLGKRGEAGGSTVVDMASIYNNSEGQNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVINSPSSQTTSLNNNNNNGDAAMMLGSNTTTTTTVAANANDHFSSLTHSSNSFDQLVMQVNGQLQSEPVKLKLHSNAVENNLTRDFLGVSGGGGGGGPQYLSQELAKFASINSPMGLIQFTSNQ* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0446 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 520 - -
Gso10g0446 532 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Gso10g0446 532 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Gso10g0446 532 PANTHER ZINC FINGER PROTEIN JACKDAW 7 520 IPR033243 GO:0003700
Gso10g0446 532 Gene3D Classic Zinc Finger 120 198 - -
Gso10g0446 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Gso10g0446 532 MobiDBLite consensus disorder prediction 1 27 - -
Gso10g0446 532 MobiDBLite consensus disorder prediction 1 49 - -
Gso10g0446 532 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Gso10g0446 532 Gene3D Classic Zinc Finger 43 117 - -
Gso10g0446 532 SMART c2h2final6 65 87 IPR013087 -
Gso10g0446 532 SMART c2h2final6 106 136 IPR013087 -
Gso10g0446 532 SMART c2h2final6 141 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0446 Gso-Chr10 4752951 4756170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0446 1 220 IDZ Gene Family AT5G03150 69.796 1.23e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0446 zf-C2H2_jaz 7.9e-05 CL0361