Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0444 ATGGGGCATAGACATTTATATAGCTCATCTCCAATATTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCATGGTAGGAGTACCACTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCATAGATAGCATTTCTTTTCCATCTCATTGGAACACTGCCCCAAGGTCAAACGGATATGCATCCACAAGTCTCAACATTGAAGCACCCCCTCATCAAACAGATGTATCAGGCACTTCTCATGATCATTTTCTGCCTTCATCAAGTGCTGGAATGTTTTATGCAGTGCCTGAAAATTATGTACACCAGCCTTCTAATTCTAATTATGACAGACAAGCATTTTCTGCTGCTGATGGGGGTTTTATTGATCTTACAATGGGAAATGGACGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTCCAGTCTGTGAAAGAGGCAGTACAAGCAGATATTCCAATGCTACAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCAGCCAGAGAAGCCCAATATGGATTCTCTATATATGCCTTGGGACCATGTTAATATGACACCCACATTTAGAGGTAGAGGCCTATCTATAAGGGGTGAGGGTCCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCAAATACTCATCCACACAACTCATACTCTACTGGTCTACCAATTGACCATTCTAACATGGTCGATCTTTCAACTCAAACTTCTGGCACTTTGACCAGGGATTGGAGCCCAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAGATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGTAGAAATCCTACTGCTCCTCAAAGTTTTCATAATAATCTGACTCAAACTGCAAGAGGAGTTCACAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCTAGCTTACGTTTGGGACGTGTGGCACCTTCTGATGATGGATTGCATATGGTGTCCGAAAGTTACTCTTCTAGACAGCCAAGGCCATTGACCACCGTTGGCTGGCAGAACAATAATAGAAATGGAAGGTCAAGAATACCTAGTGACAGATATCGGTCATTGGATGATGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGACCTAGGAATATGCTTGATCGACATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACATGGACGATGTCGGGACGCTGAAAGCTTGTGGACATGATTACCATGTGGGTTGCATTAGGAAGTGGTTGTCTATGAAGAAAGTATGTCCTATATGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGGCAAATAA 1620 0.4216 MGHRHLYSSSPIFEGEPDQNWNHMHMDQQYVNHGRSTTSDNGSFIYPLENMSIDSISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLPSSSAGMFYAVPENYVHQPSNSNYDRQAFSAADGGFIDLTMGNGRGPHKRKSPGIPPVCERGSTSRYSNATNAADRPTSSELQPEKPNMDSLYMPWDHVNMTPTFRGRGLSIRGEGPLRNVRSRSALDLESNLARTHLSNTHPHNSYSTGLPIDHSNMVDLSTQTSGTLTRDWSPMSICPPHGRVSSSDANAFNHEASHFLIGSSSSNAPVDVGGFHNEFGTSRNPTAPQSFHNNLTQTARGVHSNYSQRSTPTFRASSSLRLGRVAPSDDGLHMVSESYSSRQPRPLTTVGWQNNNRNGRSRIPSDRYRSLDDEGFMIVDRTSLYGPRNMLDRHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEQSQEEEACAICLEEYKNMDDVGTLKACGHDYHVGCIRKWLSMKKVCPICKASALPEDKKGK* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0444 539 MobiDBLite consensus disorder prediction 140 184 - -
Gso10g0444 539 ProSiteProfiles Zinc finger RING-type profile. 486 528 IPR001841 -
Gso10g0444 539 CDD RING-H2_TTC3 486 528 - -
Gso10g0444 539 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 534 IPR045191 GO:0061630
Gso10g0444 539 MobiDBLite consensus disorder prediction 374 402 - -
Gso10g0444 539 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 534 - -
Gso10g0444 539 SMART ring_2 486 527 IPR001841 -
Gso10g0444 539 Pfam Ring finger domain 485 528 IPR001841 -
Gso10g0444 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 532 IPR013083 -
Gso10g0444 539 MobiDBLite consensus disorder prediction 374 398 - -
Gso10g0444 539 MobiDBLite consensus disorder prediction 158 182 - -
Gso10g0444 539 SUPERFAMILY RING/U-box 475 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0444 Gso-Chr10 4713797 4722139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0444 1 537 C3H Transcription Factor Family AT2G37150 41.081 3.55e-107 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0444 - - gmx:547939 1120.53