Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0435 ATGGGGAGGAAAGGAAATAGTTGGTTTTCTACTATGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACTTCAGAATCAACCTCACAATCTGATAATGCACCACCTCTTCCTCTACCTGAGATTATTTTAACTCATGTCGAGAGTGAAATCAACCATGATCGGGTTGAAGTTGCAACTGCAGTGGATGCTGAGGAACCTGTTCTTGCAGTTCAGACAGCAGCTGCTGAGGTTCAAGCCACAACAATTGTTCAGTTTGACAATAAACCAACAGAAGAAATGGCAGCAATCAGGATTCAAAAAGCTTTTCGTGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGTTGGTCAGGTTGAGATCACTGATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGCACCCTCCGTTCTATGCAGACTTTTGCTCATTTGCAAACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAATCAAGCACTACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGCTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCATAACTGGAAGAATGCATCAAGATCTATAAACCCAATGTTCATGGATCCAACCAATCCAGCCTGGGGTTGGAGTTGGTTGGAACGATGGACGGCAGCCCGGCCCTGGGAGAGCCATAGCCAGATGGAGAAAGAGAAGAATGGCAATAAATCTCTAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAAGCATTTGCTAAGTTTCAGCTCAATTCTGAGAAGCATTCTCCAACAGCCAGCCAAAATCCAGGCTCACCTAACTTCGAGTCGCATTCCCAATCCCATTCAAATCCTCCCAAGCCACCTTCTCCAGCAGTTGCTAAGAAACTGAAGAAAGCAAGTCCTAAGGATATCTTGGCTATAGATGATGACACCAAAAGCATGATAAGCGTGCAGTCAGAGCGGCCGCGGAGGCACTCCATTGCTGGATCGATAGTTGGAGATGACGAAAGCCTTGCAAGCTCTCCATCTATTCCAAGTTACATGGTGCCAACTAAATCTGCGAAAGCCAAGTCCCGGATGCAAAGTCCATTAGCAGCAGAATACGGAACACCAGAAAAAGGGTCCTCCGGGACTGCAAAGAAACGTCTTTCTTTCCCAGCTTCGCCTGCTAGGCCAAGGAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTCAATGCTGAAATCACTGTGGGAAATGGTGTGGCTGGTTGA 1425 0.4604 MGRKGNSWFSTMKKALSPEPKEKNDQNSSRSKKKWFQKQKLQTSESTSQSDNAPPLPLPEIILTHVESEINHDRVEVATAVDAEEPVLAVQTAAAEVQATTIVQFDNKPTEEMAAIRIQKAFRGYLARRALRALRGLVRLRSLMEGPVVKRQAISTLRSMQTFAHLQTQIRSRRLRMLEENQALQKQLLQKHAKELESMRLGEEWDDSVQSKEQVEAKLLSKYEASMRRERAMAYSFSHQHNWKNASRSINPMFMDPTNPAWGWSWLERWTAARPWESHSQMEKEKNGNKSLRSSSRGITSAEISKAFAKFQLNSEKHSPTASQNPGSPNFESHSQSHSNPPKPPSPAVAKKLKKASPKDILAIDDDTKSMISVQSERPRRHSIAGSIVGDDESLASSPSIPSYMVPTKSAKAKSRMQSPLAAEYGTPEKGSSGTAKKRLSFPASPARPRRHSGPPKVESSFNAEITVGNGVAG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0435 474 PANTHER IQ-DOMAIN 5-RELATED 5 470 - -
Gso10g0435 474 MobiDBLite consensus disorder prediction 16 32 - -
Gso10g0435 474 MobiDBLite consensus disorder prediction 1 57 - -
Gso10g0435 474 MobiDBLite consensus disorder prediction 276 298 - -
Gso10g0435 474 MobiDBLite consensus disorder prediction 40 54 - -
Gso10g0435 474 Gene3D iswi atpase 108 135 - -
Gso10g0435 474 MobiDBLite consensus disorder prediction 315 339 - -
Gso10g0435 474 MobiDBLite consensus disorder prediction 353 376 - -
Gso10g0435 474 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Gso10g0435 474 MobiDBLite consensus disorder prediction 315 474 - -
Gso10g0435 474 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 470 - -
Gso10g0435 474 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515
Gso10g0435 474 SMART iq_5 110 132 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0435 Gso-Chr10 4624828 4628567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0435 1 473 IQD Protein Family AT5G03040 51.120 1.33e-140 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0435 - - gmx:100801847 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1488 19 43724944 43729383 Gso10g0435 10 4624828 4628567 PCT
Gso3g1502 3 40924998 40929168 Gso10g0435 10 4624828 4628567 PCT
Gso10g0435 10 4624828 4628567 Gso19g1488 19 43724944 43729383 PCT
Gso10g0435 10 4624828 4628567 Gso3g1502 3 40924998 40929168 PCT