LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g0431	ATGGGGAAGACACATGGAATGGGAGCTGCTCGCAAGCTCAAGTCTCACCGCAGGAGGCAAAGGTGGGCTGATAAGTCATACAAGAAATCCCATCTTGGGAATGAATGGAAGAAACCTTTTGCCGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAAGCTAAGCAGCCCAACTCTGCTATTCGTAAGTGTGCCAGAGTTCAACTTATCAAGAATGGGAAGAAAATTGCAGCTTTTGTCCCTAATGATGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAGGGTCATGCTGTGGGAGATATTCCTGGTGTCAGATTTAAGGTTGTGAAGGTATCTGGTGTCTCTCTTCTGGCTCTTTTCAAGGAGAAGAAGGAGAAACCAAGGTCTTAA	429	0.4476	MGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g0431	142	MobiDBLite	consensus disorder prediction	1	30	-	-
	Gso10g0431	142	SUPERFAMILY	Nucleic acid-binding proteins	20	140	IPR012340	-
	Gso10g0431	142	ProSitePatterns	Ribosomal protein S12 signature.	59	66	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Gso10g0431	142	Gene3D	-	25	142	IPR012340	-
	Gso10g0431	142	PIRSF	RPS12p_RPS12a_RPS23e_RPS12o	16	142	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Gso10g0431	142	TIGRFAM	uS12_E_A: ribosomal protein uS12	6	141	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Gso10g0431	142	PANTHER	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	1	142	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Gso10g0431	142	CDD	Ribosomal_S23	26	139	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Gso10g0431	142	Pfam	Ribosomal protein S12/S23	31	141	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Gso10g0431	142	MobiDBLite	consensus disorder prediction	9	25	-	-
	Gso10g0431	142	PANTHER	40S RIBOSOMAL PROTEIN S23	1	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g0431	Gso-Chr10	4577835	4579381	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g0431	1	142	Cytoplasmic Ribosomal Protein Gene Family	AT5G02960	95.070	1.42e-95	270

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g0431	K02973		-	gmx:100796694	289.271

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1486	19	43708700	43710465	Gso10g0431	10	4577835	4579381	PCT
	Gso3g1500	3	40909670	40911388	Gso10g0431	10	4577835	4579381	PCT
	Gso10g0431	10	4577835	4579381	Gso19g1486	19	43708700	43710465	PCT
	Gso10g0431	10	4577835	4579381	Gso3g1500	3	40909670	40911388	PCT