Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0427 ATGTCCGATGCTCCGGCGAGTCCATGCGGCGGCGGCGGCGGAGGCAGCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAATTTCCGCGAGCAGGACCGCTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCTCCCAACGGGAAAATCGCCAAGGACGCCAAGGAAACCGTGCAGGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCAGCGAAGCGAGCGATAAGTGTCAGAGAGAGAAGAGGAAGACCATCAACGGCGACGATTTGCTTTGGGCTATGACCACTTTAGGTTTCGAGGAGTATATTGATCCGCTCAAGGTTTACCTCGCCGCTTACAGAGAGATTGAGGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGATGCATCTGCTAAGAGAGATGTTTATCAGAGTCCTAATGGCCAGGTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG 489 0.5399 MSDAPASPCGGGGGGSHESGEHSPRSNFREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMTTLGFEEYIDPLKVYLAAYREIEGDSKGSAKGGDASAKRDVYQSPNGQVAHQGSFSQGVNYTNS* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0427 162 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Gso10g0427 162 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 162 - -
Gso10g0427 162 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Gso10g0427 162 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Gso10g0427 162 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Gso10g0427 162 MobiDBLite consensus disorder prediction 123 162 - -
Gso10g0427 162 MobiDBLite consensus disorder prediction 1 31 - -
Gso10g0427 162 MobiDBLite consensus disorder prediction 139 162 - -
Gso10g0427 162 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso10g0427 162 Gene3D Histone, subunit A 21 152 IPR009072 GO:0046982
Gso10g0427 162 SUPERFAMILY Histone-fold 31 133 IPR009072 GO:0046982
Gso10g0427 162 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0427 Gso-Chr10 4547613 4550729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0427 12 153 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.231 2.00e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso10g0427 CBFD_NFYB_HMF 6.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0427 K08065 - gmx:100791435 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1483 19 43682979 43687936 Gso10g0427 10 4547613 4550729 PCT
Gso3g1498 3 40891310 40895685 Gso10g0427 10 4547613 4550729 PCT
Gso10g0427 10 4547613 4550729 Gso19g1483 19 43682979 43687936 PCT
Gso10g0427 10 4547613 4550729 Gso3g1498 3 40891310 40895685 PCT