Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0424 ATGGCCGCAGCAGCACGTCCTCTCGTCACCGTGCAGGCCCTCGACAGTGACATGGCCACCGACGCCTCCGCCACCGTCCCTATCCCTGACGTCATGAAGTCCTCCATCCGCCCGGACATCGTCAACTTCGTACACTCCAACATCTCCAAGAACAGCCGACAACCCTATGCAGTCAGCCGCCGCGCCGGCCACCAGACTTCCGCCGAGTCCTGGGGAACCGGTCGTGCCGTCTCCCGTATCCCCCGTGTTCCCGGCGGCGGAACCCATCGCGCCGGCCAGGGAGCCTTCGGAAACATGTGTCGTGGAGGACGCATGTTTGCCCCGACCAAGATCTGGCGCCGCTGGCACAGGAAAATCAATGTGAACCAGAAGCGCTACGCCGTTGTCTCCGCCATCGCTGCCTCCGCCATCCCCTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGTCCGTCCCGGAGCTCCCACTCGTCGTTAGCGACTCCGCCGAGAGCGTCGAGAAAACAAAAGAAGCAATCAAAGTCCTCAAGCAGATCGGAGCATTCCCTGACGCAGAGAAAGCAAAAGACAGTCGCAGCATTCGTCCTGGAAAGGGGAAAATGCGTAACCGTCGCTACATCTCACGCCGTGGACCACTCATCGTGTACGGAACGGAAGGAGCCAAAGCCGTTAAGGCCTTCCGTAACGTCCCCGGCGTGGAAGTCGCTAACGTCGAGAGGCTTAACCTTCTGAAACTTGCTCCAGGAGGACACCTCGGGAGGTTTGTGGTTTGGACAAAAAGCGCTTTTGAGAAGCTGGATTCGATTTATGGGTCTTTTGATAAGCCCTCTGAGAAGAAGAAGGGGTACTTGCTTCCCAGGCCCAAGATGGTTAACTCTGATCTTGCCAGGATTATTAATTCTGACGAGGTTCAGTCTGTTGTGAGGCCCATTAAGAAGGATGTGAAGAAGGCCACGCTGAAGAAGAACCCTCTTAAGAACCTGAACTCTATGCTGAAGCTGAATCCTTATGCCAAGACTGCTAAGAGGATGGCTCTTCTTGCTGAAGCTCAGCGCGTTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTCTCTAAGGAGGAAGCTTCTGCCATCAAGTCTGCTGGGAAAGCATGGTATCACACTATGGTGTCAGATTCTGATTATACAGAATTCGACAACTTTTCTAAGTGGCTGGGTGTTTCACAGTAA 1218 0.5542 MAAAARPLVTVQALDSDMATDASATVPIPDVMKSSIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAESVEKTKEAIKVLKQIGAFPDAEKAKDSRSIRPGKGKMRNRRYISRRGPLIVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRPKMVNSDLARIINSDEVQSVVRPIKKDVKKATLKKNPLKNLNSMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKTVSKEEASAIKSAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0424 405 Coils Coil 342 369 - -
Gso10g0424 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gso10g0424 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
Gso10g0424 405 SUPERFAMILY Ribosomal protein L4 20 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gso10g0424 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Gso10g0424 405 MobiDBLite consensus disorder prediction 54 94 - -
Gso10g0424 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Gso10g0424 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Gso10g0424 405 MobiDBLite consensus disorder prediction 54 73 - -
Gso10g0424 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0424 Gso-Chr10 4504227 4506927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0424 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.921 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0424 K02930 - gmx:100786828 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1480 19 43635186 43636897 Gso10g0424 10 4504227 4506927 PCT
Gso3g1495 3 40844783 40846564 Gso10g0424 10 4504227 4506927 PCT
Gso10g0424 10 4504227 4506927 Gso19g1480 19 43635186 43636897 PCT
Gso10g0424 10 4504227 4506927 Gso3g1495 3 40844783 40846564 PCT