Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0423 ATGAAATCAGTGTGGTGGAAAGAAGTTGTGTTTGTGTTTGTGTTTGGTGTTGGGACAATTGATATTGGTGGCTCTCAAATTGTGAACCGCACATATACCCACCCTGCTTCCCACGCCACATCGTTCTCCCTCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGCTCTTTCTTGTTGAAACTGTGAGTCTATGTTATTTGTGGCGGAGCATGAACTCCACCACCAACACTTCGAATTCTCAGTCAATGGCTGCAGCAGCACCGAGTGATGGTTCTGGGAAGAAGGTAAGAAAGCCTTACACCATAACCAAGTCCAGAGAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCATCGAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCTGGAGCCGATAAACCCATGACCTGTCAGGATGAACTCAACAATCTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAGCACAGATTACCAACAGCAGTCTCAGTGGTGTAGGAAATTCTACTGGAGCACTACCGACTTCTGAGATACCCAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGAAACAAACGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGTATTGTCAACATATGATGTCAATACCGTGGCAGTAGGAATTGATGTCAAGACAAATGATCTATCATGTCAAACCGCTTAA 1116 0.4409 MKSVWWKEVVFVFVFGVGTIDIGGSQIVNRTYTHPASHATSFSLSLPPSLSLSLSLSLSLSKLFLVETVSLCYLWRSMNSTTNTSNSQSMAAAAPSDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYASSRNTLAPGFASWDETSLLMNAGADKPMTCQDELNNLHHGNEADIGSKGIAQITNSSLSGVGNSTGALPTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKVLSTYDVNTVAVGIDVKTNDLSCQTA* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0423 371 MobiDBLite consensus disorder prediction 81 105 - -
Gso10g0423 371 CDD SANT 115 158 IPR001005 -
Gso10g0423 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 162 IPR017930 -
Gso10g0423 371 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 111 160 IPR006447 GO:0003677
Gso10g0423 371 Gene3D - 116 163 - -
Gso10g0423 371 SMART sant 112 160 IPR001005 -
Gso10g0423 371 PANTHER PROTEIN REVEILLE 8 80 362 - -
Gso10g0423 371 ProSiteProfiles SANT domain profile. 111 164 IPR017884 -
Gso10g0423 371 SUPERFAMILY Homeodomain-like 107 163 IPR009057 -
Gso10g0423 371 PANTHER SWI/SNF COMPLEX-RELATED 80 362 - -
Gso10g0423 371 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
Gso10g0423 371 Pfam Myb-like DNA-binding domain 113 158 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0423 Gso-Chr10 4492809 4498209 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso10g0423 Myb_DNA-binding 6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0423 - - gsj:114372630 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1479 19 43629054 43632794 Gso10g0423 10 4492809 4498209 PCT
Gso3g1494 3 40839732 40844646 Gso10g0423 10 4492809 4498209 PCT
Gso10g0423 10 4492809 4498209 Gso19g1479 19 43629054 43632794 PCT
Gso10g0423 10 4492809 4498209 Gso3g1494 3 40839732 40844646 PCT