Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0418 ATGGGTTGGATTCCCTGTTCTGGAAGTTCAAACAGTAAGAAGAAGTTGAAGAAGAAATTGGAGAAGATGGAAGCGCAGAACAGCCTCGTTGATCCGATCAAAGCCACCCCAGGGAAATTGAAGAGGAATTCATCCATGAATTCCAAAGAGTCCTCCAAAAATGGAAACCCTGAGCACATTGCTGCACAGACATTCTCATTCCGTGAATTGGCAACTGCAACTAGAAACTTCAAAGCCGAATGTCTTTTGGGTGAGGGAGGCTTTGGCAGAGTATACAAGGGGCGTTTGGAAAATATTAATCAGATTGTCGCAATTAAACAACTTGACCGAAATGGACTACAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGGGATCAAAGGCTTCTAGTTTATGAATTTATGTCTTTAGGATCCTTGGAAGACCACTTACATGATATTTCTCCTGGCAAGAAAGAACTTGACTGGAACACAAGGATGAAAATAGCTGCTGGGGCTGCAAGAGGATTGGAATATTTGCATGACAAAGCTAATCCTCCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGATATCATCCAAAGTTATCTGATTTTGGTCTGGCCAAACTTGGTCCAGTGGGGGAAAACACCCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGGCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGACAATTCAAAAGCTGCAGGAGAGCAGAATCTTGTTGCATGGGCCAGACCATTGTTTAAAGATCGAAGAAAATTTTCGCAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTTCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGAGTTACCTTGCTTTGCAAAAATATGACCCAAATACACAGACAGTACAAAGCTCTCGCCTTGCTCCTGGTACTCCTCCAAGATCCAAGAGGGGATATGATATTCTGGTGCAAATTTCAAACATCTTACAACACACTGCAAGTTATAGATTTGTAGATCATAATACCAGTTGTCTTATGGTGGTGATCTTTCTTCAGAGCATAGTTGCTAAAAATGTTTTGTAA 1275 0.4173 MGWIPCSGSSNSKKKLKKKLEKMEAQNSLVDPIKATPGKLKRNSSMNSKESSKNGNPEHIAAQTFSFRELATATRNFKAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMSLGSLEDHLHDISPGKKELDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLALQKYDPNTQTVQSSRLAPGTPPRSKRGYDILVQISNILQHTASYRFVDHNTSCLMVVIFLQSIVAKNVL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0418 424 MobiDBLite consensus disorder prediction 40 58 - -
Gso10g0418 424 Gene3D Transferase(Phosphotransferase) domain 1 154 371 - -
Gso10g0418 424 Pfam Protein tyrosine and serine/threonine kinase 80 349 IPR001245 GO:0004672|GO:0006468
Gso10g0418 424 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0418 424 SUPERFAMILY Protein kinase-like (PK-like) 57 351 IPR011009 -
Gso10g0418 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Gso10g0418 424 PANTHER OS07G0668900 PROTEIN 1 382 - -
Gso10g0418 424 MobiDBLite consensus disorder prediction 1 58 - -
Gso10g0418 424 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Gso10g0418 424 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g0418 424 Coils Coil 6 26 - -
Gso10g0418 424 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 382 - -
Gso10g0418 424 CDD STKc_IRAK 83 351 - -
Gso10g0418 424 Gene3D Phosphorylase Kinase; domain 1 61 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0418 Gso-Chr10 4435813 4439371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0418 11 355 Glycoside Hydrolase AT3G07070 64.655 6.58e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso10g0418 PK_Tyr_Ser-Thr 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0418 - - gmx:100499648 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1473 19 43575630 43578816 Gso10g0418 10 4435813 4439371 PCT
Gso3g1488 3 40799154 40802390 Gso10g0418 10 4435813 4439371 PCT
Gso10g0418 10 4435813 4439371 Gso19g1473 19 43575630 43578816 PCT
Gso10g0418 10 4435813 4439371 Gso3g1488 3 40799154 40802390 PCT