Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0414 ATGATGGTTAGATCGTGTTGGAAGCCAATTGCTGATGGTGATGAAGGAGATGGGAGTGGGAGAGTTGATGGTCTTCTATGGTACAAGGATTTGGGGAACCACCTTTATGGGGAATTCTCAATGGCTGTGGTTCAGGCCAATAGTTCATTAGAGGATCGAGGTGAACTTGAGTCTGGACCCTTGAGTTCTAATCACTTGGGTCCTCAAGGGACTTTTATAGGTGTTTATGATGGCCATGGTGGAAGTGAGGCTTCGCAGTTTGTCAGTGACAATCTCTTCTGCAATCTCAAAAGGCTTGCATCTGAAAATCAAGGCGTGTCAGAACATGTTATCAAAAGGGCTTACTCAGCAACAGAGGAGAGTTTTCTGTCTCTTGTGAAGAAACAGTGGCTAAGTAAGCCACAGATTGCATCCACTGGTACTTGTTGTTTGGTGGGGGTGATTTGCAATGGCATGATATATGTTGCAAATTCTGGAGATTCCCGGGTGGTGTTAGGAAGATTAGAGAGAGCAACAAGGGAAATAGAAGCTATACAGTTATCTACAGAACACAATGTTAACCAAGAATCGGTGAGAGATGAACTTCGGTCAAAGCACCCCTTTGATTCACAAATCGTGGTTTTGAGACAAAACGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCACGATCCATAGGGGATGCATATCTGAAGAAAGCAGAATTCAACAGGGATCCTCTACCAGCCAAGTATAGACTAGCAGAAACATTCTTCAGGCCAATTCTTAGTTGTGAGCCATCAACATCATCCCACACACTCCACCCTGATGATCAATTTCTCATATTTGCTTCTGATGGCTTATGGGAGCATCTTACCAACCAAGAGGTTGTTAGCATAGTCAGCAACAATCCACCTAACGGAATTGCTAGAAGACTTGTGAAAGCTGCACTTAGAGAAGCAGCTAAGAAGTGTGAAATGAGACTTTCTGACCTCCAAAAGATTGAGCAAGGGATGAGGAGACACATCCATGATGACATAACAGTGATTGTGGTGTTTCTTAATCCAAAACTCACTGAGAACACCTCTCTCTGTGGTTCTCCTCTTTCAATCAAGGGAGGTGGGTCTGCCAATTCCTAG 1116 0.44 MMVRSCWKPIADGDEGDGSGRVDGLLWYKDLGNHLYGEFSMAVVQANSSLEDRGELESGPLSSNHLGPQGTFIGVYDGHGGSEASQFVSDNLFCNLKRLASENQGVSEHVIKRAYSATEESFLSLVKKQWLSKPQIASTGTCCLVGVICNGMIYVANSGDSRVVLGRLERATREIEAIQLSTEHNVNQESVRDELRSKHPFDSQIVVLRQNVWRVKGLIQVSRSIGDAYLKKAEFNRDPLPAKYRLAETFFRPILSCEPSTSSHTLHPDDQFLIFASDGLWEHLTNQEVVSIVSNNPPNGIARRLVKAALREAAKKCEMRLSDLQKIEQGMRRHIHDDITVIVVFLNPKLTENTSLCGSPLSIKGGGSANS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0414 371 SMART PP2C_4 32 344 IPR001932 -
Gso10g0414 371 CDD PP2Cc 36 346 IPR001932 -
Gso10g0414 371 Coils Coil 307 327 - -
Gso10g0414 371 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Gso10g0414 371 ProSiteProfiles PPM-type phosphatase domain profile. 35 346 IPR001932 -
Gso10g0414 371 Pfam Protein phosphatase 2C 56 315 IPR001932 -
Gso10g0414 371 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 369 - -
Gso10g0414 371 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
Gso10g0414 371 Gene3D - 29 355 IPR036457 -
Gso10g0414 371 SUPERFAMILY PP2C-like 64 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0414 Gso-Chr10 4386987 4389977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0414 2 367 PP2C-type Phosphatase Gene Family AT3G12620 64.499 4.45e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0414 K01102 - gmx:100814123 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1469 19 43552788 43556010 Gso10g0414 10 4386987 4389977 PCT
Gso3g1484 3 40777325 40780371 Gso10g0414 10 4386987 4389977 PCT
Gso10g0414 10 4386987 4389977 Gso19g1469 19 43552788 43556010 PCT
Gso10g0414 10 4386987 4389977 Gso3g1484 3 40777325 40780371 PCT