Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0412 ATGGAAGAAACAACATCAGCCATCATCATGTCAGCACTCTCCACTCTCACCCCTTCCCAATTCTCAGATCTAACTCGCTCCATTCTCTCAGCCACCAACCACCACCATCGCCGCCTCTCTTCCCTCCTCTCCTACCCCACGCTCTTCTCTCTAACCCTTCACCATCTCCACACTCTCTCCCTCCCTCAAAAAACTCTTCTTATCGCCCGCCACCTCCTCTCCTCCCTCCACCTCCTCACCGCCACGTCGCCGCATTTATCCACCGCCACGCGGCAGCGAGACCTCGACGCCGCGCTGCTCCTCCTCCTCCTCTGCGAGACGCATAACCACAACCCGCATGCCCTCGAGGCACCGGTCTCCGAATGGAGAAAAATCTTGAGCAAACTCTTCTCTGATTCATTGTTAACTGTTTCTCTTGCACCCCTTGGGACGGTTATGATTCCCTTCGTTGAGACGGTGTCGCGGTGCTGGAGGCTCGTGGGTGCGCTGGACTGCGGCGGAGGGAAGGAGGCGGCGGAGGTGGCCGCGTCGGCGGCGACGGTGGTGGCGCTGCCGTCGGTGGAGGTGAGGCACGACGGAAGAGAGTGCGTGATATGCAAAGAGGAGATGGGAATAGGGAGGGACGTGTGCGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGTATCTTGCCATGGTTGGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTGCCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTGTGGGAAGTCTTGCTTAAAATGGCAGCAAAAGATTCATAG 795 0.5723 MEETTSAIIMSALSTLTPSQFSDLTRSILSATNHHHRRLSSLLSYPTLFSLTLHHLHTLSLPQKTLLIARHLLSSLHLLTATSPHLSTATRQRDLDAALLLLLLCETHNHNPHALEAPVSEWRKILSKLFSDSLLTVSLAPLGTVMIPFVETVSRCWRLVGALDCGGGKEAAEVAASAATVVALPSVEVRHDGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLLKMAAKDS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0412 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 243 IPR013083 -
Gso10g0412 264 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Gso10g0412 264 SUPERFAMILY RING/U-box 190 242 - -
Gso10g0412 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 4 260 - -
Gso10g0412 264 SMART ring_2 196 236 IPR001841 -
Gso10g0412 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 260 - -
Gso10g0412 264 Pfam Ring finger domain 195 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0412 Gso-Chr10 4363914 4365708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0412 1 258 C3H Transcription Factor Family AT5G02750 52.330 2.16e-80 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0412 - - gmx:100810879 476.092