Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0401 ATGGGTAACGCTCATCATTCACAATGGCATCGCAAACACGGTAACTCCGTTCTTCCGCCCCATAAATACAATCCTCAGCCACCACCAACCACCTCCAATTCCAACATGCTTTCTCTTCCTTACACCCACGTCGACACCACTCTCCGCTCCCTCGCCGCCCAAGCCGAGGGCTTCGGTCGCTTCGCCATCGGCGGCCTCCACGGTCCCCTTCACCACGTCACATCTCTCGCAGATGATGGACCGGGGTCGCTGCGTGACGCGTGTCGCCGAAAAGAACCACTGTGGATTGTGTTTGAGGTTTCCGGCACCATTCAACTCTCCTCCTACTTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATCAAACTCAGCGGAAAAGGCTTGCGGCTGAAGGAATGCGAGCACGTGATAATTTGTAATCTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGACGCCATTCAGATCAAACCTAATTCCAAGCACATATGGATTGATCGTTGCACGCTTAGTGATTTTGATGATGGGCTCATAGATATCACCCGAGAAAGCACAGACATTACTATTTCAAGGTGTCACTTCTCCCAGCATGACAAAGCCATGCTCATTGGGGCTGATCCCTCGCATGTTGGAGATAGGTGCATGAGGGTGACCATACACCATTGTTTTTTCAATGGGACTCGACAGAGGCAACCTCGTGTTAGGTTCGCAAAAGTGCATCTGTACAACAATTATATCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGACAGAAAAAGGTGGCATTTAAGTACCTTACTGAGCAGGCAGCAGACAAGGAAGTGGGAGCAACTGGTACCATAATGTCTGAAGGAGACATATTCTTAAATGGTGCTAAAGCGGGATTAATGGCTGTGGATGTTTCATGCAACATGTTTCACCCCAGTGAACACTATCCCTCTTGGACAGTGGAAGCCCCTACAGATGATCTGAAACAGATTCTTCATCACTGCACTGGATGGCAATCTCTTGCTAGGCCAGCAGATCGAACACTATGA 1095 0.4922 MGNAHHSQWHRKHGNSVLPPHKYNPQPPPTTSNSNMLSLPYTHVDTTLRSLAAQAEGFGRFAIGGLHGPLHHVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIQLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKAMLIGADPSHVGDRCMRVTIHHCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEQAADKEVGATGTIMSEGDIFLNGAKAGLMAVDVSCNMFHPSEHYPSWTVEAPTDDLKQILHHCTGWQSLARPADRTL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0401 364 SUPERFAMILY Pectin lyase-like 54 360 IPR011050 -
Gso10g0401 364 PRINTS Pollen allergen Amb family signature 54 71 IPR018082 -
Gso10g0401 364 PRINTS Pollen allergen Amb family signature 234 253 IPR018082 -
Gso10g0401 364 PRINTS Pollen allergen Amb family signature 256 275 IPR018082 -
Gso10g0401 364 PANTHER PECTATE LYASE 33 358 - -
Gso10g0401 364 Gene3D - 41 346 IPR012334 -
Gso10g0401 364 PANTHER PECTATE LYASE 18-RELATED 33 358 IPR045032 GO:0030570
Gso10g0401 364 MobiDBLite consensus disorder prediction 1 37 - -
Gso10g0401 364 MobiDBLite consensus disorder prediction 1 17 - -
Gso10g0401 364 Pfam Pectate lyase 109 272 IPR002022 -
Gso10g0401 364 SMART amb_all 81 279 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0401 Gso-Chr10 4245515 4248867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0401 76 361 Polysaccharide Lyase AT3G55140 75.524 2.66e-169 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0401 K01728 - gmx:100799009 728.013