Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0399 ATGGCGAGGATAAAGGTTTACGAGCTTAGGAACAAGACGAAGGCGGAGCTGCTGAACCAGCTGAAGGATCTCAAGGCGGAGCTTGCCCTGCTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAAATCAAGGTGGTGAGGCTTTCGATAGCGCAGGTTTTGACGGTTATTTCCCAAAAGCAGAAAGCGGCGCTGAGAGAGGCTTACAAGAAGAAGAAGTATTTGCCCCTTGACCTACGTCCCAAAAAGACCCGCGCCATTCGGAGACGCCTTACCAAACACCAGGCGTCTTTGAAGACGGAACGTGAGAAAAAGAAGGAGCTGTACTTTCCACTAAGAAAGTATGCGATCAAAGTTTAG 372 0.5215 MARIKVYELRNKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYAIKV* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0399 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Gso10g0399 123 Gene3D - 78 123 - -
Gso10g0399 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 123 - -
Gso10g0399 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Gso10g0399 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Gso10g0399 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Gso10g0399 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Gso10g0399 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Gso10g0399 123 CDD Ribosomal_L29_HIP 8 64 - -
Gso10g0399 123 Coils Coil 7 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0399 Gso-Chr10 4223747 4225504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0399 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 88.618 1.99e-72 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0399 K02918 - gmx:100789845 233.417