Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0394 ATGGTAGCAATTCTCAAGAGACAGGGAGAAAACGAATCCGAAGAAACCATCATAGGCTTGGCAAAAAGTCTCATGCAACTCTCGCGTGTCCAACAACAAAGCAATAAGCCTCTTCTCAATACCTTTTCTCCAACGGAGTTCGAGTGCAAAACCTGTAACCGCAAGTTTTCATCTTTTCAAGCTCTTGGTGGCCACAGGGCTAGCCACAAGAAGCCCAAGTTCGAAGCTGAAGAACTCAAAGAAGAAGCCAAGAAGACTAAACCCAAAATGCACGAGTGTTCAATTTGTGGCATGGAATTCTCTCTGGGCCAGGCACTGGGGGGTCACATGAGAAAACACAGAGGTGCCATTAGTGAGAACGACAATAATAATAATGAAGCGTTGTCTTCTATAAAGCAAGCAATTGCAAAAGCTCCGGTTTTGAAACGATCGAATAGCAAGAGGGTCATGTGCTTGGAGATGGACCTGAATTTGACGCCTTTGGAGAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCTAGAGTCGATCTTTCTTTGTAG 543 0.4457 MVAILKRQGENESEETIIGLAKSLMQLSRVQQQSNKPLLNTFSPTEFECKTCNRKFSSFQALGGHRASHKKPKFEAEELKEEAKKTKPKMHECSICGMEFSLGQALGGHMRKHRGAISENDNNNNEALSSIKQAIAKAPVLKRSNSKRVMCLEMDLNLTPLENDLKLLFGNKAPRVDLSL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0394 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Gso10g0394 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Gso10g0394 180 SMART c2h2final6 91 113 IPR013087 -
Gso10g0394 180 SMART c2h2final6 47 69 IPR013087 -
Gso10g0394 180 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 5 175 - -
Gso10g0394 180 Pfam C2H2-type zinc finger 47 72 - -
Gso10g0394 180 Pfam C2H2-type zinc finger 91 115 - -
Gso10g0394 180 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Gso10g0394 180 Gene3D Classic Zinc Finger 44 113 - -
Gso10g0394 180 SUPERFAMILY beta-beta-alpha zinc fingers 47 113 IPR036236 -
Gso10g0394 180 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Gso10g0394 180 PANTHER ZINC FINGER PROTEIN ZAT5 5 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0394 Gso-Chr10 4165515 4166278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0394 7 180 C2H2 Transcription Factor Family AT3G53600 45.405 2.07e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0394 zf-C2H2_6 5.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0394 - - gmx:100778467 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1448 19 43368647 43369462 Gso10g0394 10 4165515 4166278 PCT
Gso3g1459 3 40592014 40592755 Gso10g0394 10 4165515 4166278 PCT
Gso10g0394 10 4165515 4166278 Gso19g1448 19 43368647 43369462 PCT
Gso10g0394 10 4165515 4166278 Gso3g1459 3 40592014 40592755 PCT