Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0393 ATGGCCATGAAGAGACATAGAGAGAATGAAGGAACAACATTAGAAAGCTGGGGCATGCAAAATTGTTCAATTTCAATCACACCCGACACAACAAGTGTTTCAAGTTCCACCACTTCCCCTGAAGAAGTATTTGAGTGCAAAACGTGCAACCGCAAGTTCAACTCTTTTCAAGCACTGGGTGGCCACAGGGCTAGTCACAACAAGAGGGTGGAGATGGAAGGTGAAGAACAACAACTCAAACTCAAAAACAAGGGCAAAATCTATGGGTTGGGAAAACAAAGTGAGCCCAAAATTCATAATTGCTTCATTTGTGGTCAGGGTTTTTCTCTGGGCCAGGCCTTGGGAGGACACATGAGAAGACACAGAGATGCAACCAACGATGTTTTCTCGTCCATAAACCAGGTTGTTGCTAAAGTTTCAGTTCTCAAGAGATCGTGTAATGACAAGGTTTTCTGCTTGGACCTCAACTTAAGTCCTCTCGAGAATGACTTGAAGTTATTGCTGTTCGGGAAAGTGTCACCCAAAGTTAATCCTTCTTCCTTCTGA 546 0.4359 MAMKRHRENEGTTLESWGMQNCSISITPDTTSVSSSTTSPEEVFECKTCNRKFNSFQALGGHRASHNKRVEMEGEEQQLKLKNKGKIYGLGKQSEPKIHNCFICGQGFSLGQALGGHMRRHRDATNDVFSSINQVVAKVSVLKRSCNDKVFCLDLNLSPLENDLKLLLFGKVSPKVNPSSF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0393 181 Pfam C2H2-type zinc finger 43 68 - -
Gso10g0393 181 Pfam C2H2-type zinc finger 99 123 - -
Gso10g0393 181 Gene3D Classic Zinc Finger 40 64 - -
Gso10g0393 181 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 30 176 - -
Gso10g0393 181 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Gso10g0393 181 PANTHER ZINC FINGER PROTEIN ZAT5 30 176 - -
Gso10g0393 181 Gene3D Classic Zinc Finger 74 149 - -
Gso10g0393 181 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Gso10g0393 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Gso10g0393 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Gso10g0393 181 SMART c2h2final6 44 66 IPR013087 -
Gso10g0393 181 SMART c2h2final6 99 121 IPR013087 -
Gso10g0393 181 SUPERFAMILY beta-beta-alpha zinc fingers 43 121 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0393 Gso-Chr10 4162322 4163050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0393 3 177 C2H2 Transcription Factor Family AT3G53600 42.623 2.09e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0393 zf-C2H2_6 1.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0393 - - gmx:100796348 345.51