Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0392 ATGAAGAGACACAGAGATGGAGTAGAGAGCATAGATTTAGTAAATTGTCTAATGTTGCTCTCTCATCACAGAGAAATCAAACCCCAAAAACTTTTGGGCCCTGAAGAATTTGAGTATATGACATGCAACCGGAAGTTCACTTCGTTTCAGGCCCTCGGAGGCCATAGGGCAAGCCACAAAAAGCCCAAATTACACGTAAAAGAACAGGGCAAAATTCTGATGTTGGGGAATAAGCCCAAAAAACACGAATGCACCATTTGTGGTAGGGAATTCACTTTGGGCCAGGCACTTGGAGGACACATGAAAAAACACAGAATTGCCGTTGACCAAGGGTTTTCTTTGATAAACGAGGTTGTTGTAAAAGTACCGTTTCTTAAAAGGTCTAATAGTAAGAGGGTTTTGTTCTTGGACTTGAACTTGAACTTGACTCCTCTGCAGAATGACTTGAAGTTATTATTTGGAGAAAAGGCACCCAAAGTTGATTCCTTCGTTTGA 495 0.4121 MKRHRDGVESIDLVNCLMLLSHHREIKPQKLLGPEEFEYMTCNRKFTSFQALGGHRASHKKPKLHVKEQGKILMLGNKPKKHECTICGREFTLGQALGGHMKKHRIAVDQGFSLINEVVVKVPFLKRSNSKRVLFLDLNLNLTPLQNDLKLLFGEKAPKVDSFV* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0392 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Gso10g0392 164 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Gso10g0392 164 Pfam C2H2-type zinc finger 41 62 - -
Gso10g0392 164 Pfam C2H2-type zinc finger 82 106 - -
Gso10g0392 164 Gene3D Classic Zinc Finger 34 104 - -
Gso10g0392 164 SMART c2h2final6 82 104 IPR013087 -
Gso10g0392 164 SMART c2h2final6 37 59 IPR013087 -
Gso10g0392 164 PANTHER ZINC FINGER PROTEIN ZAT5 1 159 - -
Gso10g0392 164 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 159 - -
Gso10g0392 164 SUPERFAMILY beta-beta-alpha zinc fingers 37 104 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0392 Gso-Chr10 4160024 4160789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0392 1 161 C2H2 Transcription Factor Family AT2G37430 47.159 3.35e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g0392 zf-C2H2_6 4.8e-10 CL0361