Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0384 ATGGGAGAGGAAGCGGATTGTGTGCATGCATTAGAAGAAGGAAAGAAGGAGAACAATGAGGAATCAAGGACGGAACTGAAGCGTGACTACGACCAATGCGTTGCTGATACTGAACCTAACGTGTCTCCTAATAAGAAACAGGCGAAAGAAGTTTCAAATGATGAAGTGCGTTCTGAGGTTTCCAACCCCAATGTTTCTGCAGCAGAGCATGCACTGACTTTTCAAGATATCAGTAGTCAACCAACTGAATCCGAAAATGTTAACCATGCGGAGTGTGGGGAACTGACGTCTACTTGCTTGGAGAATTCAAGTTCTGATGAGACCTTGAGTGATGAAGCTGGTGAACATAATAATAATAATAATAATAATAATAATAATACTTCTCAAAGTGATAAGGACACAGGTAGTGCTGCAATGACATCCTGTGTGGTGATGGAAATCCCCAAGCATGTGAGTTCATCTGGGATCAGGAAAATTACTTTTAAATTCAGTAAGAAGAAGGAGGACTATGATTACCAACCGCCTCCAGCTGTGCACCATCCTGCTCTTTATAATGATGGGAATCACATTGGCTTCCATGGGGATGATGAAGAATATTTGGCAAGGGATGATTGTAGTGGTGGGTCATTAGAAAGCCCGTGTGGAATGGGATATGTTCATGATGGAGATTTGGATTTGTACACTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTCCCCAACTGCTACCCTACAAATGTCAAAAAGCTTTTATCAACTGGCATTCTTGACGGAGCTGTAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGGTGGCGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTCGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAAGCTTGGAAAGAAAGTCTTCTACAAAGCAACGGCAAGGTTCAGGCTCATAAAAGTTATAGCACCAAACTTGTTGGCATGCCTCATACAAACATAAGTCAATCTGTAGAAAGTACAAGCCACTTGTCAACTTTGCACGTACCGAGTCATTATGAGCAGCACATGTATATGAATCAGACAACTGACGAATGGCGTGTGGTGAAAAAGCCAAGCTCCTACACTTCTAACACAGGTGTACTGCAGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTACACAGGTTGCTTTTTATGCCAAATGGGCTACCAGATGGTGCTGAGTTGGCTTACTATGTTAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGACATAGCTCTATCGTTGGCCAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCCAGGGCATTTCATGCAGCATGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTAGAGATAATGCCGGTAATGGAAGAGAATCTTCTATTGTGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACACCAGAATTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAACGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGAGACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGGATATATGTGGCACTACAGAATTCAGTTGCTGCTGGAGCAGAAATTATACCAGCTTCCGTGTCTGAACTAATAATCAGGAAGCATGAGGACAAGGGATTATGTACCTATGGGGCCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCGGAACATTTACCATTGCTTTCACGAGCTGCTGCAATTTTCCGAGAATGTTTTGATCCCATTGTTGCCATATCTGGTCGTGATCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTAGTCGCCACAAGCAGAGCACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAACGTAGAAAAGTTGGTGCTTCCTGCAGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGCGAAGATCAGGATAAAAAGGCGTGA 2601 0.4198 MGEEADCVHALEEGKKENNEESRTELKRDYDQCVADTEPNVSPNKKQAKEVSNDEVRSEVSNPNVSAAEHALTFQDISSQPTESENVNHAECGELTSTCLENSSSDETLSDEAGEHNNNNNNNNNNTSQSDKDTGSAAMTSCVVMEIPKHVSSSGIRKITFKFSKKKEDYDYQPPPAVHHPALYNDGNHIGFHGDDEEYLARDDCSGGSLESPCGMGYVHDGDLDLYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQAWKESLLQSNGKVQAHKSYSTKLVGMPHTNISQSVESTSHLSTLHVPSHYEQHMYMNQTTDEWRVVKKPSSYTSNTGVLQKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCRDNAGNGRESSIVRPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVAAGAEIIPASVSELIIRKHEDKGLCTYGAMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRAHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQDKKA* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0384 866 MobiDBLite consensus disorder prediction 114 136 - -
Gso10g0384 866 Pfam PHD-finger 545 586 IPR019787 -
Gso10g0384 866 PANTHER AUTOIMMUNE REGULATOR 5 865 - -
Gso10g0384 866 CDD PHD1_AIRE 545 585 - -
Gso10g0384 866 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 5 865 - -
Gso10g0384 866 MobiDBLite consensus disorder prediction 100 136 - -
Gso10g0384 866 ProSiteProfiles Zinc finger PHD-type profile. 543 588 IPR019787 -
Gso10g0384 866 SUPERFAMILY FYVE/PHD zinc finger 541 588 IPR011011 -
Gso10g0384 866 SUPERFAMILY FYVE/PHD zinc finger 616 672 IPR011011 -
Gso10g0384 866 ProSitePatterns Zinc finger PHD-type signature. 546 585 IPR019786 -
Gso10g0384 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 677 IPR013083 -
Gso10g0384 866 SMART PHD_3 618 675 IPR001965 -
Gso10g0384 866 SMART PHD_3 545 586 IPR001965 -
Gso10g0384 866 MobiDBLite consensus disorder prediction 1 68 - -
Gso10g0384 866 Pfam Tify domain binding domain 479 528 IPR032308 -
Gso10g0384 866 Pfam Tify domain binding domain 275 329 IPR032308 -
Gso10g0384 866 Gene3D - 766 865 - -
Gso10g0384 866 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 769 860 IPR016181 -
Gso10g0384 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 533 611 IPR013083 -
Gso10g0384 866 MobiDBLite consensus disorder prediction 1 34 - -
Gso10g0384 866 ProSitePatterns Zinc finger PHD-type signature. 619 674 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0384 Gso-Chr10 4079478 4088886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0384 1 860 PHD Transcription Factor Family AT3G53680 51.881 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso10g0384 TDBD 6.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0384 - - gmx:100808999 1679.84