Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0380 ATGGCGGCGGCGTCGCGGCGGCTCCGGGACCTGCAGTCCTCGGCGGGGAACAAGATCTGTGTGGACTGCTCCCAGAAGAACCCTCAGTGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTTGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACTCCTGGTCCGACATCCAGATCAAAAAAATGGAAGCCGGCGGCAACGACAAACTCAACGCCTTCCTCGCACAGTACTCCATCCCCAAAGAAACTGACATCGTCACGAAATATAACACCAACGCCGCTTCTGTGTACCGCAACCGGATCCAGGCCATCGCCGAGGGACGTCCCTGGCGCGATCCGCCGGTGGTGAAGGAAAACCTCTCCGCCGGAAAGGGGAAACCGCCGCTGACACAAACGCGGAGGAACAACGATTCTGGATGGGATGATTGGGGTAACGAGGGGAGTCCTCGAAGCAAGAGCATGTCGACCGGGGATTTTAGGACTCTGAATGGAGCCGGCGGAGCGCCGGCGAGGTCCAGGTCCACGGAGGATATCTACACGCGGTCGCAGCTGGAGGCGTCAGCCGCGAACAAGGAGGGATTCTTCGCGCGGAAAATGGCGGAGAACGAGTCGCGGCCGGAGGGGCTGCCGCCCTCGCTGGGAGGGAAGTATGTAGGGTTTGGATCCAGCCCGACGCCGCCGCCACAGCGGCGGAATGATGCCCAAAACGATTACTTCTCTGTCGTTTCGCAGGGGATTGGGAAGTTGTCTTTTGTTGCTGCCTCTGCGGCTAATGTTGTTCAGGTTGGCACGAAGGAGTTCACTTCCAAGGTCAAGGAAGGTGGTTACGATCATAAGGTGAATGAAACTGTCAATGTTGTCACTCAGAAGACATCAGAGATTGGACAGAGGACTTGGGGCATAATGAAAGGAGTCATGGCTATGGCTTCCCAGAAGATTGAGGAGTACACTAAGGATGATCCAAACTGGAAGAATGATAACTGGCAACGAAATGAGAATGATACAAATGGTTATTATCAGGATTTTAATCAAGAGAAAAAAGGATGGAATTCTTCTACTGGAAGAGAACAATCTTCATCAGGGGAATATAAAACTCAAAGCTCAAGCTCTTGGGATGATTGGGACCACAAAGATAGCAGGAAGGAAGAACCAGCTAAAGGATCAACTCATTCATCAGGTGGGCAGTTTAGTACCTACAACTCAAGCTCTTGGGATGATTGGGAACACAAAGATTCTAGGAAGGAAGAACCTGCTAAAGGATCAGCTCCCCATAATAATGATGATTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTCGATAATATTTATGAAGGTGCATCTAATAAGAAAGGTGTTGGTCATAAGGGGAAATCTGATGGCACTTGGACAGAGGAAGGCTTTCTCTAA 1443 0.5246 MAAASRRLRDLQSSAGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAASVYRNRIQAIAEGRPWRDPPVVKENLSAGKGKPPLTQTRRNNDSGWDDWGNEGSPRSKSMSTGDFRTLNGAGGAPARSRSTEDIYTRSQLEASAANKEGFFARKMAENESRPEGLPPSLGGKYVGFGSSPTPPPQRRNDAQNDYFSVVSQGIGKLSFVAASAANVVQVGTKEFTSKVKEGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMAMASQKIEEYTKDDPNWKNDNWQRNENDTNGYYQDFNQEKKGWNSSTGREQSSSGEYKTQSSSSWDDWDHKDSRKEEPAKGSTHSSGGQFSTYNSSSWDDWEHKDSRKEEPAKGSAPHNNDDWAGWDNAKDDGFDNIYEGASNKKGVGHKGKSDGTWTEEGFL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0380 480 SUPERFAMILY ArfGap/RecO-like zinc finger 6 114 IPR037278 -
Gso10g0380 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 399 480 - -
Gso10g0380 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 - -
Gso10g0380 480 MobiDBLite consensus disorder prediction 399 414 - -
Gso10g0380 480 MobiDBLite consensus disorder prediction 380 398 - -
Gso10g0380 480 CDD ArfGap_ArfGap1 4 118 - -
Gso10g0380 480 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Gso10g0380 480 MobiDBLite consensus disorder prediction 415 433 - -
Gso10g0380 480 MobiDBLite consensus disorder prediction 328 480 - -
Gso10g0380 480 MobiDBLite consensus disorder prediction 441 455 - -
Gso10g0380 480 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Gso10g0380 480 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Gso10g0380 480 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Gso10g0380 480 MobiDBLite consensus disorder prediction 212 243 - -
Gso10g0380 480 MobiDBLite consensus disorder prediction 136 171 - -
Gso10g0380 480 Pfam Putative GTPase activating protein for Arf 6 105 IPR001164 GO:0005096
Gso10g0380 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 399 480 IPR044519 GO:0005096|GO:0016192
Gso10g0380 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 IPR044519 GO:0005096|GO:0016192
Gso10g0380 480 MobiDBLite consensus disorder prediction 339 379 - -
Gso10g0380 480 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Gso10g0380 480 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 121 IPR001164 GO:0005096
Gso10g0380 480 MobiDBLite consensus disorder prediction 119 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0380 Gso-Chr10 4039119 4043603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0380 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 5.09e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0380 K12492 - gmx:100792658 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1435 19 43248667 43252739 Gso10g0380 10 4039119 4043603 PCT
Gso3g1445 3 40469539 40473811 Gso10g0380 10 4039119 4043603 PCT
Gso10g0380 10 4039119 4043603 Gso19g1435 19 43248667 43252739 PCT
Gso10g0380 10 4039119 4043603 Gso3g1445 3 40469539 40473811 PCT