Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0370 ATGGACGACGACGACGAAGAATACCCAATTCCTGTCTCAAAGAAACCGTCCACGCAAAACGATGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAAAACCAAAACCAACGACCGTTCAGAAAACAACCGCCGACGACGGACGGCGACGGCCCCATTCCGGCGAGGGAGATTCGATCCTCCGAAGCGGAAAACTACAATAGCCAACACTTGTTCATGCAAGAAGACGAAATGGCGTCGTGGCTGCACTATCCAATCCATGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGCGCCGACATCCTCTACCCGCCGCCATACGCCACCGCGAGCCAGAATCAAAGCAGCGCCTCCGTGCAGTCCTCCGTTCGCACGACGGAGCTCCAGCATCCGGCTCCTCGGCCTCCGATTCCGCCGCCGAGGCGGCAGGAGCATACGCTGAGCAGGATACACAATTTCACGCACTTCGCAAAGCACGGAAATGCGTCGTCGAGTTCGAAGGCGGCCGCGCCGGCGCAGCCGACGGTTGCGGATTCGTGCGACACGCCGGTAGCCACGGCGGAGCACGTGGAAACCGGCCGCGCGAGCGTCAGCGCCGCCGCCGGTAAAACCCCCGCGTCGGATGGCGGGAGGGAGACGGCGACCTGCGACGTGACCGTGACGTCATCGCCTGGCGGTTCGAGCGGGAGCGCTGAACCGGTTCAGAGAGAACCAGTGGTGAACCGGAAGAGGAAGGGAAGGGAACAAGAGGAATCGGAGTATCAGAGCGAGGATGTTGATTTTGAATCTCCGGAAGCTAAAAAGCAAGTTCGTGGTTCTACATCTACGAAAAGATCTCATGCCGCAGAAGTCCATAATCTCTCAGGGAGGGTGAGGATGAAAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATACTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAAATAAAAGTGCAGATAATGTCCATGGGATGTGGCATGGTACCTATGATATTTCCTGGAATCCAGCAGTATATGCCACCAATGGGAATGGGGATTGGGATGGGTATGGGTATGGGCATGGAAATGGGAATGGGGATGGGAATGAGCAGATCAGTAATGCCATTTCCCAATATGTTAGCTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTTCCTATGCCTCCTTTCCATATGCCCCATGTTGCTACACCTGATTCATCCAGAATGCAAGGAGCAAATCACCCAGATAATAATATGCTTAACTCACTTGGTACACTAGATCCAGATGAATCACGTATCCCAAACTTCACTGATCCTTATCAACAGTACCTCAGTCTCCAACAGGCACAGTTACAATTAATGCAGACAATGAACCAACCAAATGTCAGCAAGCCTAGTACCAGTAGAGGTCAAGAGAATCCAGAAAAGCATCAGTCAGACAAAACATGA 1485 0.5253 MDDDDEEYPIPVSKKPSTQNDEIMELLWQNGQVVMQNQNQRPFRKQPPTTDGDGPIPAREIRSSEAENYNSQHLFMQEDEMASWLHYPIHEDPPPFDHHDFCADILYPPPYATASQNQSSASVQSSVRTTELQHPAPRPPIPPPRRQEHTLSRIHNFTHFAKHGNASSSSKAAAPAQPTVADSCDTPVATAEHVETGRASVSAAAGKTPASDGGRETATCDVTVTSSPGGSSGSAEPVQREPVVNRKRKGREQEESEYQSEDVDFESPEAKKQVRGSTSTKRSHAAEVHNLSGRVRMKALQELIPRCNKSDKASILDEAIEYLKSLQIKVQIMSMGCGMVPMIFPGIQQYMPPMGMGIGMGMGMGMEMGMGMGMSRSVMPFPNMLASSTLPAATAAAHLGPRFPMPPFHMPHVATPDSSRMQGANHPDNNMLNSLGTLDPDESRIPNFTDPYQQYLSLQQAQLQLMQTMNQPNVSKPSTSRGQENPEKHQSDKT* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0370 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 341 IPR036638 GO:0046983
Gso10g0370 494 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 493 - -
Gso10g0370 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983
Gso10g0370 494 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 493 IPR031066 -
Gso10g0370 494 MobiDBLite consensus disorder prediction 218 234 - -
Gso10g0370 494 Gene3D - 280 334 IPR036638 GO:0046983
Gso10g0370 494 MobiDBLite consensus disorder prediction 163 290 - -
Gso10g0370 494 Pfam Helix-loop-helix DNA-binding domain 297 327 IPR011598 GO:0046983
Gso10g0370 494 MobiDBLite consensus disorder prediction 35 59 - -
Gso10g0370 494 MobiDBLite consensus disorder prediction 241 256 - -
Gso10g0370 494 SMART finulus 290 332 IPR011598 GO:0046983
Gso10g0370 494 MobiDBLite consensus disorder prediction 463 481 - -
Gso10g0370 494 CDD bHLH_AtPIF_like 285 340 - -
Gso10g0370 494 MobiDBLite consensus disorder prediction 1 21 - -
Gso10g0370 494 MobiDBLite consensus disorder prediction 112 147 - -
Gso10g0370 494 MobiDBLite consensus disorder prediction 112 132 - -
Gso10g0370 494 MobiDBLite consensus disorder prediction 463 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0370 Gso-Chr10 3944315 3956141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0370 19 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 39.003 7.99e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g0370 HLH 1.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0370 - - gmx:100792121 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1434 3 40372310 40378419 Gso10g0370 10 3944315 3956141 PCT
Gso10g0370 10 3944315 3956141 Gso3g1434 3 40372310 40378419 PCT