Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0369 ATGGACGACGACGACGAAGAATACCCAATTCCTGTCTCAAAGAAACCGTCCACGCAAAACGATGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAAAACCAAAACCAACGACCGTTCAGAAAACAACCGCCGACGACGGACGGCGACGGCCCCATTCCGGCGAGGGAGATTCGATCCTCCGAAGCGGAAAACTACAATAGCCAACACTTGTTCATGCAAGAAGACGAAATGGCGTCGTGGCTGCACTATCCAATCCATGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGCGCCGACATCCTCTACCCGCCGCCATACGCCACCGCGAGCCAGAATCAAAGCAGCGCCTCCGTGCAGTCCTCCGTTCGCACGACGGAGCTCCAGCATCCGGCTCCTCGGCCTCCGATTCCGCCGCCGAGGCGGCAGGAGCATACGCTGAGCAGGATACACAATTTCACGCACTTCGCAAAGCACGGAAATGCGTCGTCGAGTTCGAAGGCGGCCGCGCCGGCGCAGCCGACGGTTGCGGATTCGTGCGACACGCCGGTAGCCACGGCGGAGCACGTGGAAACCGGCCGCGCGAGCGTCAGCGCCGCCGCCGGTAAAACCCCCGCGTCGGATGGCGGGAGGGAGACGGCGACCTGCGACGTGACCGTGACGTCATCGCCTGGCGGTTCGAGCGGGAGCGCTGAACCGGTTCAGAGAGAACCAGTGGTGAACCGGAAGAGGAAGGGAAGGGAACAAGAGGAATCGGAGTATCAGAGCGAGGATGTTGATTTTGAATCTCCGGAAGCTAAAAAGCAAGTTCGTGGTTCTACATCTACGAAAAGATCTCATGCTGCAGAAGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAGAAGATGAAAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATATTTCCTGGAATCCAGCAGTATATGCCACCAATGGGAATGGGGATTGGGATGGGTATGGGTATGGGTATGGGCATGGAAATGGGAATGGGAATGAACAGATCAGTAATGCCATTTCCCAATATGTTAGCTAGTTCGACTTTGCCAGCAGCAACTGCAACTGCTCATTTGGGACCAAGGTTTCCTATGCCTCCTTTCCATATGCCCCATGTTGCTACACCTGATTCATCCAGAATGCAAGGAGCAAATCACCCAGATAATAATATGCTTAACTCACTTGGTACACTAGATCCAGATCAATCATGTATCCCAAACTTCACTGATCCTTATCAACAGTACCTCAGTCTCCAACAGGCACAGTTACAATTAATGCAGACAATGAACCAACCAAATGTCAGCAAGCCTAGTACCAGTAGAGGTCAAGAGAATCCAGAAAAGCATCAGTCAGACAAAACATGA 1506 0.5212 MDDDDEEYPIPVSKKPSTQNDEIMELLWQNGQVVMQNQNQRPFRKQPPTTDGDGPIPAREIRSSEAENYNSQHLFMQEDEMASWLHYPIHEDPPPFDHHDFCADILYPPPYATASQNQSSASVQSSVRTTELQHPAPRPPIPPPRRQEHTLSRIHNFTHFAKHGNASSSSKAAAPAQPTVADSCDTPVATAEHVETGRASVSAAAGKTPASDGGRETATCDVTVTSSPGGSSGSAEPVQREPVVNRKRKGREQEESEYQSEDVDFESPEAKKQVRGSTSTKRSHAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMIFPGIQQYMPPMGMGIGMGMGMGMGMEMGMGMNRSVMPFPNMLASSTLPAATATAHLGPRFPMPPFHMPHVATPDSSRMQGANHPDNNMLNSLGTLDPDQSCIPNFTDPYQQYLSLQQAQLQLMQTMNQPNVSKPSTSRGQENPEKHQSDKT* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0369 501 MobiDBLite consensus disorder prediction 163 299 - -
Gso10g0369 501 Gene3D - 279 342 IPR036638 GO:0046983
Gso10g0369 501 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 500 - -
Gso10g0369 501 SMART finulus 290 339 IPR011598 GO:0046983
Gso10g0369 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Gso10g0369 501 MobiDBLite consensus disorder prediction 218 234 - -
Gso10g0369 501 Coils Coil 290 310 - -
Gso10g0369 501 Pfam Helix-loop-helix DNA-binding domain 288 334 IPR011598 GO:0046983
Gso10g0369 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 348 IPR036638 GO:0046983
Gso10g0369 501 MobiDBLite consensus disorder prediction 35 59 - -
Gso10g0369 501 MobiDBLite consensus disorder prediction 241 256 - -
Gso10g0369 501 MobiDBLite consensus disorder prediction 1 21 - -
Gso10g0369 501 MobiDBLite consensus disorder prediction 112 147 - -
Gso10g0369 501 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 500 IPR031066 -
Gso10g0369 501 MobiDBLite consensus disorder prediction 112 132 - -
Gso10g0369 501 MobiDBLite consensus disorder prediction 475 501 - -
Gso10g0369 501 CDD bHLH_AtPIF_like 285 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0369 Gso-Chr10 3937208 3942905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0369 19 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.471 1.60e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g0369 HLH 6.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0369 - - gmx:100792121 876.315