Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0352 ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCATTAACCGAAAGCGAAAAAGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTGCTGCTTTTGAATTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGGGCAATTGATCAGAAAGCCTTGAGTGACTCTGAGACCTCTATTCTTTTTGCAAATAGAGCACATGTGAATTTGCTTCTAGGGAATCTTAGACGTGCTCTCACAGATTCTAATGAGGCCCTCAAGTTGTGCCCTTCAAATATTAAGGCAATTTATAGAGCTTCCAAGGCTTCTCTTTCACTAGATATGTTGGCTGAAGCTAGAGAGTATTGCTTGAAGGGTCTTCAGTTTGATCCCAATAATGAGGACTTGAAGAAGCTTGACCGGCTGATAGGTCTCAAGATATCAGAGAAGGAGAAGCACGAGGCTGAATTCTCCAAGGCCGTTGCGGAGACAAAGGAACTTGCGTCTGTGATAGAACATAGAGGCTTGAAGATTGGAAAGGCAATGTATCGAGAACTTATTGGATTACGGAAACCTGTGTTGGATAAAAGTAATATCCTTCATTGGCCCGTTGTTCTTCTGTATGCAGAGGTTATGTCCAGCGACTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCGGTTCACCTTGATATGGTATTTGCAGAAGATCAGTTGTTGTCATGGGATGTTGAAACCAACTACAAACGTGAATTTGTTGAATTATACTATGAGGCTGGTTCTGGAGTTAGTCTATCAAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTGCTCACAGGGAAGGTGTTGGTGATGAAGAGAAAGACACAATTGAGGATTATAAGCAACACACGGGTCCCCCTAAATGGATCAAAGTGAACGAAAGGAGAACACTCCACGATGTTCTCAAAGAGCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCAAAGCAATCCAGCTTTTATGGCAAGTTCAAAGCTGGGAAGTGGGCACCTCCAAGTATATGA 1083 0.4247 MALWMEKGSEPLTESEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDCYTRAIDQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAIYRASKASLSLDMLAEAREYCLKGLQFDPNNEDLKKLDRLIGLKISEKEKHEAEFSKAVAETKELASVIEHRGLKIGKAMYRELIGLRKPVLDKSNILHWPVVLLYAEVMSSDFIEDFCETDMFSVHLDMVFAEDQLLSWDVETNYKREFVELYYEAGSGVSLSKEKLLHCLLEGTAAAHREGVGDEEKDTIEDYKQHTGPPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKQSSFYGKFKAGKWAPPSI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0352 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 356 - -
Gso10g0352 360 SUPERFAMILY TPR-like 22 165 IPR011990 GO:0005515
Gso10g0352 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 356 - -
Gso10g0352 360 SMART tpr_5 105 138 IPR019734 GO:0005515
Gso10g0352 360 SMART tpr_5 31 66 IPR019734 GO:0005515
Gso10g0352 360 SMART tpr_5 71 104 IPR019734 GO:0005515
Gso10g0352 360 Pfam Cns1/TTC4 Wheel domain 201 266 IPR044059 GO:0051879
Gso10g0352 360 Gene3D Tetratricopeptide repeat domain 27 173 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0352 Gso-Chr10 3700015 3705161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0352 30 162 Calmodulin-binding Proteins AT3G25230 32.639 6.69e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0352 K24927 - gmx:100788789 716.457