Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0346 ATGTCAACTGTGTCAAAAGATGACAACTTGGCGCTTTCTTCGGAGGACTCTTCATGCCCAGAAGAGTCTGAGCTTGAATTGGGTCTTGGGTTGAGCCTCTCCTCTGGCTCTTCATCAAAATCTCATCACCACCATCATGCTAGAATTTACACTGCTAAGGATTTTCCTTCTTCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCATCACCTTCCTCTTCTTCTTCCTCTCCCAACAACATCACTGCTGGCACCAAGAGAGCTGCTGCTGATTCTCTTGTTGCCAATAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATAGAGTGAATAGCTTCAATAGCCATGCAAAATCAACTGAAGTATTCAACTCTGTGGCTGAGAAAAGTAAGACCGATAATACTGTGGCCAGGAAGACTAATGACAATGGCAATGATAATAACATAAATGCCAAAGAGAAAAGACACCTCAGGAGTTCCCTGTTTGTCAAGGTAAATATGGATGGGATACCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTATGAAACCTTAGCGCAAACATTAGAGGATATGTTTAATGAATCAACTACAGTCACCACTTGTAAAGGATCAAATGGTGAGGATTATGGCTTTATTATCGGAGGAGAAAGGCATTCAAAATTATTAGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGGATGTTCTTTAGCTCAGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCGAGATTGGAAGAAAACATAAAAAAGAGATGCAAGCCCATATAG 873 0.4318 MSTVSKDDNLALSSEDSSCPEESELELGLGLSLSSGSSSKSHHHHHARIYTAKDFPSSAAAAAAAAAASSSPSSSSSSPNNITAGTKRAAADSLVANNRPSQVVGWPPLRTYRVNSFNSHAKSTEVFNSVAEKSKTDNTVARKTNDNGNDNNINAKEKRHLRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGSNGEDYGFIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFFSSVRRLRIMRTSEANGLAPRLEENIKKRCKPI* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0346 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 281 - -
Gso10g0346 290 MobiDBLite consensus disorder prediction 68 96 - -
Gso10g0346 290 Pfam AUX/IAA family 24 278 IPR033389 -
Gso10g0346 290 Gene3D - 159 281 - -
Gso10g0346 290 ProSiteProfiles PB1 domain profile. 164 271 IPR000270 GO:0005515
Gso10g0346 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 281 IPR003311 GO:0005634|GO:0006355
Gso10g0346 290 SUPERFAMILY CAD & PB1 domains 159 267 - -
Gso10g0346 290 MobiDBLite consensus disorder prediction 1 49 - -
Gso10g0346 290 MobiDBLite consensus disorder prediction 1 18 - -
Gso10g0346 290 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0346 Gso-Chr10 3665711 3669669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0346 157 278 B3 DNA Binding Superfamily AT1G59750 33.607 9.06e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso10g0346 AUX_IAA 1.8e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0346 K14484 - gmx:100527033 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1402 19 42841740 42846467 Gso10g0346 10 3665711 3669669 PCT
Gso10g0346 10 3665711 3669669 Gso19g1402 19 42841740 42846467 PCT